Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MRE11P49959 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
MRE11P49959 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MRE11P49959 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MRE11P49959 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MRE11P49959 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MRE11P49959 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.58■□□□□ 0.41
MRE11P49959 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MRE11P49959 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
MRE11P49959 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
MRE11P49959 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.58■□□□□ 0.41
MRE11P49959 AC006504.4-201ENST00000592118 1568 ntBASIC17.58■□□□□ 0.41
MRE11P49959 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MRE11P49959 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC17.58■□□□□ 0.41
MRE11P49959 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MRE11P49959 C2-206ENST00000442278 2434 ntTSL 2 BASIC17.58■□□□□ 0.41
MRE11P49959 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
MRE11P49959 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
MRE11P49959 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC17.58■□□□□ 0.4
MRE11P49959 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
MRE11P49959 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
MRE11P49959 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
MRE11P49959 HMGA1P7-201ENST00000406908 502 ntBASIC17.58■□□□□ 0.4
MRE11P49959 TREML5P-201ENST00000421694 576 ntBASIC17.58■□□□□ 0.4
MRE11P49959 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.58■□□□□ 0.4
MRE11P49959 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
MRE11P49959 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
MRE11P49959 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.58■□□□□ 0.4
MRE11P49959 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.58■□□□□ 0.4
MRE11P49959 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC17.58■□□□□ 0.4
MRE11P49959 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
MRE11P49959 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MRE11P49959 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MRE11P49959 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MRE11P49959 AC073548.1-201ENST00000624088 1882 ntBASIC17.58■□□□□ 0.4
MRE11P49959 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
MRE11P49959 AC073439.1-201ENST00000624121 1774 ntBASIC17.58■□□□□ 0.4
MRE11P49959 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MRE11P49959 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
MRE11P49959 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC17.58■□□□□ 0.4
MRE11P49959 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
MRE11P49959 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
MRE11P49959 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MRE11P49959 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MRE11P49959 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MRE11P49959 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
MRE11P49959 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
MRE11P49959 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
MRE11P49959 KRT8P22-201ENST00000562317 1415 ntBASIC17.57■□□□□ 0.4
MRE11P49959 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
MRE11P49959 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
MRE11P49959 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
MRE11P49959 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
MRE11P49959 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MRE11P49959 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MRE11P49959 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
MRE11P49959 AC114271.1-201ENST00000612689 2813 ntBASIC17.57■□□□□ 0.4
MRE11P49959 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MRE11P49959 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC17.57■□□□□ 0.4
MRE11P49959 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
MRE11P49959 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MRE11P49959 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.57■□□□□ 0.4
MRE11P49959 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC17.57■□□□□ 0.4
MRE11P49959 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.57■□□□□ 0.4
MRE11P49959 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17.57■□□□□ 0.4
MRE11P49959 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
MRE11P49959 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC17.57■□□□□ 0.4
MRE11P49959 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MRE11P49959 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.57■□□□□ 0.4
MRE11P49959 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC17.57■□□□□ 0.4
MRE11P49959 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MRE11P49959 MIR6805-201ENST00000615055 62 ntBASIC17.57■□□□□ 0.4
MRE11P49959 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC17.57■□□□□ 0.4
MRE11P49959 AC007064.4-201ENST00000637740 555 ntBASIC17.57■□□□□ 0.4
MRE11P49959 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
MRE11P49959 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
MRE11P49959 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
MRE11P49959 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC17.57■□□□□ 0.4
MRE11P49959 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC17.57■□□□□ 0.4
MRE11P49959 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
MRE11P49959 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC17.57■□□□□ 0.4
MRE11P49959 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
MRE11P49959 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MRE11P49959 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MRE11P49959 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
MRE11P49959 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.56■□□□□ 0.4
MRE11P49959 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.56■□□□□ 0.4
MRE11P49959 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.56■□□□□ 0.4
MRE11P49959 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MRE11P49959 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.56■□□□□ 0.4
MRE11P49959 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC17.56■□□□□ 0.4
MRE11P49959 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
MRE11P49959 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.56■□□□□ 0.4
MRE11P49959 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC17.56■□□□□ 0.4
MRE11P49959 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
MRE11P49959 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MRE11P49959 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
MRE11P49959 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MRE11P49959 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC17.56■□□□□ 0.4
MRE11P49959 AC004241.5-201ENST00000623870 2448 ntBASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms