Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC14.72□□□□□ -0.05
CXCL12P48061 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
CXCL12P48061 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.72□□□□□ -0.05
CXCL12P48061 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CXCL12P48061 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CXCL12P48061 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL12P48061 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL12P48061 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL12P48061 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL12P48061 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.71□□□□□ -0.05
CXCL12P48061 AC007292.2-201ENST00000593524 1812 ntBASIC14.71□□□□□ -0.05
CXCL12P48061 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC14.71□□□□□ -0.05
CXCL12P48061 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
CXCL12P48061 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
CXCL12P48061 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL12P48061 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL12P48061 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL12P48061 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL12P48061 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL12P48061 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL12P48061 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL12P48061 LINC02199-201ENST00000506655 2702 ntBASIC14.71□□□□□ -0.05
CXCL12P48061 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
CXCL12P48061 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL12P48061 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
CXCL12P48061 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC14.71□□□□□ -0.05
CXCL12P48061 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC14.71□□□□□ -0.05
CXCL12P48061 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC14.71□□□□□ -0.05
CXCL12P48061 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC14.71□□□□□ -0.05
CXCL12P48061 AC084752.1-201ENST00000509766 622 ntBASIC14.71□□□□□ -0.05
CXCL12P48061 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL12P48061 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC14.71□□□□□ -0.05
CXCL12P48061 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC14.71□□□□□ -0.05
CXCL12P48061 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CXCL12P48061 MIR5196-201ENST00000578146 115 ntBASIC14.71□□□□□ -0.05
CXCL12P48061 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC14.71□□□□□ -0.05
CXCL12P48061 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC14.71□□□□□ -0.05
CXCL12P48061 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC14.71□□□□□ -0.05
CXCL12P48061 AP000322.3-201ENST00000608665 388 ntBASIC14.71□□□□□ -0.05
CXCL12P48061 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC14.71□□□□□ -0.05
CXCL12P48061 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC14.71□□□□□ -0.05
CXCL12P48061 CYP2T1P-202ENST00000641596 2535 ntBASIC14.71□□□□□ -0.05
CXCL12P48061 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.71□□□□□ -0.05
CXCL12P48061 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
CXCL12P48061 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CXCL12P48061 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CXCL12P48061 HLA-DQB1-202ENST00000399079 1501 ntBASIC14.71□□□□□ -0.06
CXCL12P48061 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CXCL12P48061 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC14.71□□□□□ -0.06
CXCL12P48061 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC14.71□□□□□ -0.06
CXCL12P48061 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CXCL12P48061 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CXCL12P48061 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.71□□□□□ -0.06
CXCL12P48061 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
CXCL12P48061 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 AC090616.6-203ENST00000579186 1945 ntBASIC14.7□□□□□ -0.06
CXCL12P48061 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC14.7□□□□□ -0.06
CXCL12P48061 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CXCL12P48061 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CXCL12P48061 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC14.7□□□□□ -0.06
CXCL12P48061 LINC01815-202ENST00000641468 1409 ntBASIC14.7□□□□□ -0.06
CXCL12P48061 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC14.7□□□□□ -0.06
CXCL12P48061 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC14.7□□□□□ -0.06
CXCL12P48061 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC14.7□□□□□ -0.06
CXCL12P48061 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC14.7□□□□□ -0.06
CXCL12P48061 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC14.7□□□□□ -0.06
CXCL12P48061 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC14.7□□□□□ -0.06
CXCL12P48061 AC138701.2-201ENST00000553634 226 ntBASIC14.7□□□□□ -0.06
CXCL12P48061 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CXCL12P48061 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC14.7□□□□□ -0.06
CXCL12P48061 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC14.7□□□□□ -0.06
CXCL12P48061 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.7□□□□□ -0.06
CXCL12P48061 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.7□□□□□ -0.06
CXCL12P48061 AC099398.1-201ENST00000567919 2776 ntBASIC14.7□□□□□ -0.06
CXCL12P48061 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.7□□□□□ -0.06
CXCL12P48061 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
CXCL12P48061 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC14.7□□□□□ -0.06
CXCL12P48061 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
CXCL12P48061 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CXCL12P48061 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms