Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SLC6A4P31645 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.32■□□□□ 0.04
SLC6A4P31645 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SLC6A4P31645 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SLC6A4P31645 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
SLC6A4P31645 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
SLC6A4P31645 AC006058.4-201ENST00000624016 1670 ntBASIC15.32■□□□□ 0.04
SLC6A4P31645 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.32■□□□□ 0.04
SLC6A4P31645 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC6A4P31645 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SLC6A4P31645 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.31■□□□□ 0.04
SLC6A4P31645 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
SLC6A4P31645 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC6A4P31645 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.31■□□□□ 0.04
SLC6A4P31645 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.31■□□□□ 0.04
SLC6A4P31645 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC6A4P31645 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SLC6A4P31645 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC6A4P31645 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
SLC6A4P31645 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC6A4P31645 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC6A4P31645 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.31■□□□□ 0.04
SLC6A4P31645 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.31■□□□□ 0.04
SLC6A4P31645 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC6A4P31645 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SLC6A4P31645 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
SLC6A4P31645 SMS-201ENST00000379404 1174 ntTSL 3 BASIC15.31■□□□□ 0.04
SLC6A4P31645 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC15.31■□□□□ 0.04
SLC6A4P31645 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC15.31■□□□□ 0.04
SLC6A4P31645 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC6A4P31645 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC15.31■□□□□ 0.04
SLC6A4P31645 APOA2-204ENST00000464492 530 ntTSL 3 BASIC15.31■□□□□ 0.04
SLC6A4P31645 AC099548.2-209ENST00000480264 625 ntBASIC15.31■□□□□ 0.04
SLC6A4P31645 ALG3P1-201ENST00000508806 1114 ntBASIC15.31■□□□□ 0.04
SLC6A4P31645 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC6A4P31645 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC15.31■□□□□ 0.04
SLC6A4P31645 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC15.31■□□□□ 0.04
SLC6A4P31645 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC15.31■□□□□ 0.04
SLC6A4P31645 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC15.31■□□□□ 0.04
SLC6A4P31645 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.31■□□□□ 0.04
SLC6A4P31645 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC6A4P31645 AC020907.1-201ENST00000616460 1350 ntBASIC15.31■□□□□ 0.04
SLC6A4P31645 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SLC6A4P31645 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SLC6A4P31645 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC6A4P31645 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
SLC6A4P31645 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC6A4P31645 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
SLC6A4P31645 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC15.31■□□□□ 0.04
SLC6A4P31645 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
SLC6A4P31645 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC6A4P31645 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
SLC6A4P31645 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC15.31■□□□□ 0.04
SLC6A4P31645 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC6A4P31645 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
SLC6A4P31645 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
SLC6A4P31645 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
SLC6A4P31645 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
SLC6A4P31645 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
SLC6A4P31645 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC15.3■□□□□ 0.04
SLC6A4P31645 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 MIR1247-201ENST00000408206 136 ntBASIC15.3■□□□□ 0.04
SLC6A4P31645 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 POM121L10P-201ENST00000436994 1285 ntBASIC15.3■□□□□ 0.04
SLC6A4P31645 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC15.3■□□□□ 0.04
SLC6A4P31645 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC15.3■□□□□ 0.04
SLC6A4P31645 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC15.3■□□□□ 0.04
SLC6A4P31645 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC15.3■□□□□ 0.04
SLC6A4P31645 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC15.3■□□□□ 0.04
SLC6A4P31645 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC15.3■□□□□ 0.04
SLC6A4P31645 AL022328.3-201ENST00000607943 679 ntBASIC15.3■□□□□ 0.04
SLC6A4P31645 GRN-222ENST00000639447 1314 ntTSL 2 BASIC15.3■□□□□ 0.04
SLC6A4P31645 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.3■□□□□ 0.04
SLC6A4P31645 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.3■□□□□ 0.04
SLC6A4P31645 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SLC6A4P31645 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.3■□□□□ 0.04
SLC6A4P31645 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
SLC6A4P31645 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SLC6A4P31645 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.29■□□□□ 0.04
SLC6A4P31645 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms