Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
SPTA1P02549 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC13.52□□□□□ -0.24
SPTA1P02549 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
SPTA1P02549 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
SPTA1P02549 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
SPTA1P02549 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC13.52□□□□□ -0.25
SPTA1P02549 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SPTA1P02549 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SPTA1P02549 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.25
SPTA1P02549 FUK-202ENST00000378912 3925 ntTSL 2 BASIC13.52□□□□□ -0.25
SPTA1P02549 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SPTA1P02549 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SPTA1P02549 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
SPTA1P02549 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC13.52□□□□□ -0.25
SPTA1P02549 SLC9A7P1-202ENST00000556476 2239 ntBASIC13.52□□□□□ -0.25
SPTA1P02549 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
SPTA1P02549 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
SPTA1P02549 OR2K2-202ENST00000374428 1038 ntBASIC13.52□□□□□ -0.25
SPTA1P02549 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
SPTA1P02549 RHEB-207ENST00000496004 744 ntTSL 2 BASIC13.52□□□□□ -0.25
SPTA1P02549 AC008723.1-201ENST00000506922 207 ntBASIC13.52□□□□□ -0.25
SPTA1P02549 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC13.52□□□□□ -0.25
SPTA1P02549 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC13.52□□□□□ -0.25
SPTA1P02549 MIR4472-1-201ENST00000584349 80 ntBASIC13.52□□□□□ -0.25
SPTA1P02549 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC13.52□□□□□ -0.25
SPTA1P02549 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC13.52□□□□□ -0.25
SPTA1P02549 AL109837.1-201ENST00000603272 613 ntBASIC13.52□□□□□ -0.25
SPTA1P02549 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC13.52□□□□□ -0.25
SPTA1P02549 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SPTA1P02549 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
SPTA1P02549 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SPTA1P02549 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC13.52□□□□□ -0.25
SPTA1P02549 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC13.52□□□□□ -0.25
SPTA1P02549 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC13.52□□□□□ -0.25
SPTA1P02549 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 PES1-204ENST00000402284 2144 ntTSL 5 BASIC13.51□□□□□ -0.25
SPTA1P02549 LINC01165-201ENST00000445190 1623 ntBASIC13.51□□□□□ -0.25
SPTA1P02549 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 KRT18P9-201ENST00000604826 1300 ntBASIC13.51□□□□□ -0.25
SPTA1P02549 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 NORAD-201ENST00000565493 5339 ntBASIC13.51□□□□□ -0.25
SPTA1P02549 AC055811.4-201ENST00000624039 1754 ntBASIC13.51□□□□□ -0.25
SPTA1P02549 HIST2H2BA-201ENST00000412169 381 ntBASIC13.51□□□□□ -0.25
SPTA1P02549 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
SPTA1P02549 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC13.51□□□□□ -0.25
SPTA1P02549 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 AC020910.5-201ENST00000623668 1865 ntBASIC13.51□□□□□ -0.25
SPTA1P02549 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC13.51□□□□□ -0.25
SPTA1P02549 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC13.51□□□□□ -0.25
SPTA1P02549 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC13.51□□□□□ -0.25
SPTA1P02549 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 AC009090.5-201ENST00000624886 2285 ntBASIC13.51□□□□□ -0.25
SPTA1P02549 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC13.51□□□□□ -0.25
SPTA1P02549 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC13.51□□□□□ -0.25
SPTA1P02549 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC13.51□□□□□ -0.25
SPTA1P02549 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 AL354861.1-201ENST00000445213 355 ntBASIC13.51□□□□□ -0.25
SPTA1P02549 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC13.51□□□□□ -0.25
SPTA1P02549 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC13.51□□□□□ -0.25
SPTA1P02549 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC13.51□□□□□ -0.25
SPTA1P02549 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC13.51□□□□□ -0.25
SPTA1P02549 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
SPTA1P02549 AC100827.2-201ENST00000563214 1194 ntBASIC13.51□□□□□ -0.25
SPTA1P02549 CR392039.1-201ENST00000623217 204 ntBASIC13.51□□□□□ -0.25
SPTA1P02549 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 STXBP1-202ENST00000373302 3967 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC13.51□□□□□ -0.25
SPTA1P02549 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC13.51□□□□□ -0.25
SPTA1P02549 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC13.51□□□□□ -0.25
SPTA1P02549 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
SPTA1P02549 MYO9A-202ENST00000424560 4008 ntTSL 5 BASIC13.51□□□□□ -0.25
SPTA1P02549 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SPTA1P02549 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
SPTA1P02549 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SPTA1P02549 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SPTA1P02549 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SPTA1P02549 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SPTA1P02549 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms