Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SMC4Q9NTJ3 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 AC139749.1-202ENST00000617529 3139 ntBASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 INE2-201ENST00000630399 1874 ntBASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 TPM3P8-201ENST00000330554 643 ntBASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 RN7SKP230-201ENST00000365642 335 ntBASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 AC005034.1-201ENST00000426657 489 ntBASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 MESTP3-201ENST00000503460 968 ntBASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 AC113367.3-201ENST00000508316 1912 ntBASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 AC126755.1-201ENST00000525846 6405 ntBASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 AL138725.1-201ENST00000407347 1314 ntBASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC19.23■□□□□ 0.67
SMC4Q9NTJ3 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 AC016694.1-201ENST00000434179 700 ntBASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 AC007551.1-201ENST00000457394 519 ntBASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 AL391280.1-201ENST00000506969 1062 ntBASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 KRT90P-201ENST00000549264 1064 ntBASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 AC132938.4-201ENST00000623835 848 ntBASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 AL035252.4-201ENST00000624174 288 ntBASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 AC023908.3-201ENST00000564211 3047 ntBASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 AC097359.2-201ENST00000604992 2389 ntBASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 AC020910.5-201ENST00000623668 1865 ntBASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
SMC4Q9NTJ3 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 AC005912.2-201ENST00000619492 2400 ntBASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 TLE1P1-201ENST00000422965 589 ntBASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 KRT43P-201ENST00000434019 910 ntBASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms