Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
CCDC54Q8NEL0 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 REXO1L1P-201ENST00000379010 6598 ntBASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 MIR1233-2-201ENST00000408138 82 ntBASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 MIR1233-1-201ENST00000408722 82 ntBASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 RRP7BP-205ENST00000566851 833 ntBASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 SRD5A3P1-201ENST00000603021 949 ntBASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 AC005840.4-201ENST00000541242 2494 ntBASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.16□□□□□ -0.3
CCDC54Q8NEL0 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 AC005912.2-201ENST00000619492 2400 ntBASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 AL138799.1-201ENST00000448213 1675 ntBASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 DRD5P1-201ENST00000456605 1438 ntBASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 AC015802.1-201ENST00000588104 1449 ntBASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 ADAM12-202ENST00000368679 7938 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.15□□□□□ -0.3
CCDC54Q8NEL0 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms