Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
SMC1BQ8NDV3 AC105020.1-201ENST00000435356 2205 ntBASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 AL596257.1-201ENST00000641463 2694 ntBASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 ZBTB45P1-201ENST00000452761 1456 ntBASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 MIR648-201ENST00000385046 94 ntBASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 AC092580.1-201ENST00000433998 658 ntBASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 RPL3P5-201ENST00000441645 1232 ntBASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 GNG10P1-201ENST00000452289 199 ntBASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 AC068831.5-201ENST00000557387 328 ntBASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 MED11-202ENST00000573708 802 ntTSL 2 BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 AC084364.1-201ENST00000551967 1556 ntBASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 AC005915.1-201ENST00000624912 2018 ntBASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC17.57■□□□□ 0.4
SMC1BQ8NDV3 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 PTGER4P2-201ENST00000328411 252 ntBASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 NME6-208ENST00000435684 599 ntTSL 2 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 ERP29P1-201ENST00000442902 706 ntBASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 DUX4L50-201ENST00000455245 715 ntBASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 PTGER4P3-201ENST00000458150 252 ntBASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 TREHP1-201ENST00000531328 465 ntBASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 AC068867.1-201ENST00000559855 150 ntBASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 GOLGA2P7-209ENST00000560408 745 ntBASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 RN7SL121P-201ENST00000584223 273 ntBASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 AC007250.1-201ENST00000608934 338 ntBASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 AC010976.2-201ENST00000609697 852 ntBASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 AC027601.3-201ENST00000622907 509 ntBASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms