Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 SNX21-203ENST00000372541 771 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 B9D1-203ENST00000395615 805 ntTSL 3 BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 MIR663B-201ENST00000408361 115 ntBASIC16.33■□□□□ 0.2
VPS52Q8N1B4 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 AL009178.2-201ENST00000597278 2719 ntBASIC16.33■□□□□ 0.2
VPS52Q8N1B4 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 AL023775.1-201ENST00000454907 1746 ntBASIC16.33■□□□□ 0.2
VPS52Q8N1B4 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 AC105250.1-201ENST00000509378 2057 ntBASIC16.33■□□□□ 0.2
VPS52Q8N1B4 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC16.33■□□□□ 0.2
VPS52Q8N1B4 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 KRT8P14-201ENST00000414254 1442 ntBASIC16.32■□□□□ 0.2
VPS52Q8N1B4 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 FAM8A4P-201ENST00000435433 1213 ntBASIC16.32■□□□□ 0.2
VPS52Q8N1B4 AC018735.1-201ENST00000437208 1502 ntBASIC16.32■□□□□ 0.2
VPS52Q8N1B4 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 BX284668.4-201ENST00000453917 508 ntBASIC16.32■□□□□ 0.2
VPS52Q8N1B4 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS52Q8N1B4 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.31■□□□□ 0.2
VPS52Q8N1B4 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS52Q8N1B4 HLA-DPB2-205ENST00000435074 1188 ntBASIC16.31■□□□□ 0.2
VPS52Q8N1B4 POM121L10P-201ENST00000436994 1285 ntBASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 759.1 ms