Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
USP39Q53GS9 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.27■□□□□ 0.03
USP39Q53GS9 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
USP39Q53GS9 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC15.27■□□□□ 0.03
USP39Q53GS9 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC15.27■□□□□ 0.03
USP39Q53GS9 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
USP39Q53GS9 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
USP39Q53GS9 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
USP39Q53GS9 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.26■□□□□ 0.03
USP39Q53GS9 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
USP39Q53GS9 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.26■□□□□ 0.03
USP39Q53GS9 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
USP39Q53GS9 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC15.26■□□□□ 0.03
USP39Q53GS9 SMS-201ENST00000379404 1174 ntTSL 3 BASIC15.26■□□□□ 0.03
USP39Q53GS9 HLA-DQB2-229ENST00000411527 1059 ntBASIC15.26■□□□□ 0.03
USP39Q53GS9 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC15.26■□□□□ 0.03
USP39Q53GS9 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15.26■□□□□ 0.03
USP39Q53GS9 SPTLC1P5-201ENST00000450718 252 ntBASIC15.26■□□□□ 0.03
USP39Q53GS9 TMEM198B-204ENST00000484016 896 ntBASIC15.26■□□□□ 0.03
USP39Q53GS9 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC15.26■□□□□ 0.03
USP39Q53GS9 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC15.26■□□□□ 0.03
USP39Q53GS9 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC15.26■□□□□ 0.03
USP39Q53GS9 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
USP39Q53GS9 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC15.26■□□□□ 0.03
USP39Q53GS9 AL353726.2-201ENST00000623259 884 ntBASIC15.26■□□□□ 0.03
USP39Q53GS9 SNX1-214ENST00000625244 324 ntTSL 5 BASIC15.26■□□□□ 0.03
USP39Q53GS9 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
USP39Q53GS9 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.26■□□□□ 0.03
USP39Q53GS9 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
USP39Q53GS9 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
USP39Q53GS9 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.26■□□□□ 0.03
USP39Q53GS9 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
USP39Q53GS9 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
USP39Q53GS9 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
USP39Q53GS9 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
USP39Q53GS9 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
USP39Q53GS9 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.25■□□□□ 0.03
USP39Q53GS9 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
USP39Q53GS9 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.25■□□□□ 0.03
USP39Q53GS9 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC15.25■□□□□ 0.03
USP39Q53GS9 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.25■□□□□ 0.03
USP39Q53GS9 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
USP39Q53GS9 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC15.25■□□□□ 0.03
USP39Q53GS9 RN7SL11P-201ENST00000471305 293 ntBASIC15.25■□□□□ 0.03
USP39Q53GS9 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC15.25■□□□□ 0.03
USP39Q53GS9 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
USP39Q53GS9 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.25■□□□□ 0.03
USP39Q53GS9 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC15.25■□□□□ 0.03
USP39Q53GS9 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
USP39Q53GS9 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.25■□□□□ 0.03
USP39Q53GS9 AC073413.1-201ENST00000603927 732 ntBASIC15.25■□□□□ 0.03
USP39Q53GS9 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC15.25■□□□□ 0.03
USP39Q53GS9 AP001002.3-201ENST00000623482 206 ntBASIC15.25■□□□□ 0.03
USP39Q53GS9 AC100757.4-201ENST00000626934 759 ntBASIC15.25■□□□□ 0.03
USP39Q53GS9 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
USP39Q53GS9 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
USP39Q53GS9 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.25■□□□□ 0.03
USP39Q53GS9 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
USP39Q53GS9 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
USP39Q53GS9 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
USP39Q53GS9 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
USP39Q53GS9 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
USP39Q53GS9 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
USP39Q53GS9 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
USP39Q53GS9 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
USP39Q53GS9 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
USP39Q53GS9 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC15.25■□□□□ 0.03
USP39Q53GS9 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
USP39Q53GS9 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC15.25■□□□□ 0.03
USP39Q53GS9 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
USP39Q53GS9 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
USP39Q53GS9 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.25■□□□□ 0.03
USP39Q53GS9 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
USP39Q53GS9 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
USP39Q53GS9 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
USP39Q53GS9 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
USP39Q53GS9 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
USP39Q53GS9 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
USP39Q53GS9 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
USP39Q53GS9 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms