Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC15.14■□□□□ 0.01
CHRNA4P43681 POM121L8P-201ENST00000417732 1281 ntBASIC15.14■□□□□ 0.01
CHRNA4P43681 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC15.14■□□□□ 0.01
CHRNA4P43681 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC15.14■□□□□ 0.01
CHRNA4P43681 POM121L9P-203ENST00000441984 1285 ntBASIC15.14■□□□□ 0.01
CHRNA4P43681 AL355864.2-201ENST00000447420 863 ntBASIC15.14■□□□□ 0.01
CHRNA4P43681 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHRNA4P43681 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.14■□□□□ 0.01
CHRNA4P43681 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC15.14■□□□□ 0.01
CHRNA4P43681 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC15.14■□□□□ 0.01
CHRNA4P43681 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.14■□□□□ 0.01
CHRNA4P43681 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC15.14■□□□□ 0.01
CHRNA4P43681 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CHRNA4P43681 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHRNA4P43681 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHRNA4P43681 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.14■□□□□ 0.01
CHRNA4P43681 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHRNA4P43681 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CHRNA4P43681 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHRNA4P43681 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CHRNA4P43681 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHRNA4P43681 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
CHRNA4P43681 CLUHP2-201ENST00000426660 1303 ntBASIC15.14■□□□□ 0.01
CHRNA4P43681 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHRNA4P43681 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHRNA4P43681 AC003102.2-201ENST00000589195 1469 ntBASIC15.14■□□□□ 0.01
CHRNA4P43681 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHRNA4P43681 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CHRNA4P43681 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC15.13■□□□□ 0.01
CHRNA4P43681 AC117489.1-201ENST00000625169 3217 ntBASIC15.13■□□□□ 0.01
CHRNA4P43681 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHRNA4P43681 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHRNA4P43681 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CHRNA4P43681 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHRNA4P43681 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC15.13■□□□□ 0.01
CHRNA4P43681 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHRNA4P43681 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHRNA4P43681 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHRNA4P43681 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
CHRNA4P43681 COPE-202ENST00000349893 948 ntTSL 2 BASIC15.13■□□□□ 0.01
CHRNA4P43681 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CHRNA4P43681 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CHRNA4P43681 EDF1-203ENST00000371649 790 ntTSL 2 BASIC15.13■□□□□ 0.01
CHRNA4P43681 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC15.13■□□□□ 0.01
CHRNA4P43681 AC005229.1-201ENST00000392885 409 ntBASIC15.13■□□□□ 0.01
CHRNA4P43681 AC092933.1-201ENST00000393644 945 ntBASIC15.13■□□□□ 0.01
CHRNA4P43681 PGF-202ENST00000405431 666 ntTSL 5 BASIC15.13■□□□□ 0.01
CHRNA4P43681 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC15.13■□□□□ 0.01
CHRNA4P43681 AC245100.3-201ENST00000441281 285 ntBASIC15.13■□□□□ 0.01
CHRNA4P43681 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.13■□□□□ 0.01
CHRNA4P43681 AL590640.2-201ENST00000457038 527 ntBASIC15.13■□□□□ 0.01
CHRNA4P43681 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC15.13■□□□□ 0.01
CHRNA4P43681 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC15.13■□□□□ 0.01
CHRNA4P43681 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC15.13■□□□□ 0.01
CHRNA4P43681 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
CHRNA4P43681 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC15.13■□□□□ 0.01
CHRNA4P43681 AC015936.2-201ENST00000593177 259 ntBASIC15.13■□□□□ 0.01
CHRNA4P43681 AC233724.13-201ENST00000598383 410 ntBASIC15.13■□□□□ 0.01
CHRNA4P43681 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.13■□□□□ 0.01
CHRNA4P43681 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHRNA4P43681 INE2-201ENST00000630399 1874 ntBASIC15.13■□□□□ 0.01
CHRNA4P43681 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHRNA4P43681 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHRNA4P43681 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHRNA4P43681 SALL4P5-201ENST00000419001 1760 ntBASIC15.13■□□□□ 0.01
CHRNA4P43681 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CHRNA4P43681 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
CHRNA4P43681 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.13■□□□□ 0.01
CHRNA4P43681 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHRNA4P43681 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHRNA4P43681 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHRNA4P43681 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHRNA4P43681 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHRNA4P43681 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHRNA4P43681 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHRNA4P43681 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.12■□□□□ 0.01
CHRNA4P43681 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CHRNA4P43681 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHRNA4P43681 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHRNA4P43681 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CHRNA4P43681 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CHRNA4P43681 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.12■□□□□ 0.01
CHRNA4P43681 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
CHRNA4P43681 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHRNA4P43681 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHRNA4P43681 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
CHRNA4P43681 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CHRNA4P43681 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC15.12■□□□□ 0.01
CHRNA4P43681 PNKD-204ENST00000436005 978 ntTSL 5 BASIC15.12■□□□□ 0.01
CHRNA4P43681 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC15.12■□□□□ 0.01
CHRNA4P43681 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC15.12■□□□□ 0.01
CHRNA4P43681 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CHRNA4P43681 AC005225.4-201ENST00000557330 545 ntBASIC15.12■□□□□ 0.01
CHRNA4P43681 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC15.12■□□□□ 0.01
CHRNA4P43681 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.12■□□□□ 0.01
CHRNA4P43681 AC025279.2-201ENST00000569730 653 ntBASIC15.12■□□□□ 0.01
CHRNA4P43681 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHRNA4P43681 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC15.12■□□□□ 0.01
CHRNA4P43681 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC15.12■□□□□ 0.01
CHRNA4P43681 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms