Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 RBFOX1-214ENST00000552089 1430 ntTSL 5 BASIC15.29■□□□□ 0.04
COL9A1P20849 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC15.29■□□□□ 0.04
COL9A1P20849 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
COL9A1P20849 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC15.29■□□□□ 0.04
COL9A1P20849 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC15.29■□□□□ 0.04
COL9A1P20849 HIST1H2APS2-201ENST00000454426 370 ntBASIC15.29■□□□□ 0.04
COL9A1P20849 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
COL9A1P20849 AC092905.1-201ENST00000467527 949 ntBASIC15.29■□□□□ 0.04
COL9A1P20849 AC026470.1-201ENST00000478038 846 ntBASIC15.29■□□□□ 0.04
COL9A1P20849 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC15.29■□□□□ 0.04
COL9A1P20849 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC15.29■□□□□ 0.04
COL9A1P20849 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
COL9A1P20849 DUX4L47-201ENST00000566374 394 ntBASIC15.29■□□□□ 0.04
COL9A1P20849 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
COL9A1P20849 AP005264.6-204ENST00000588436 719 ntBASIC15.29■□□□□ 0.04
COL9A1P20849 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC15.29■□□□□ 0.04
COL9A1P20849 AC090953.1-201ENST00000604305 1092 ntBASIC15.29■□□□□ 0.04
COL9A1P20849 AC138466.3-201ENST00000619983 221 ntBASIC15.29■□□□□ 0.04
COL9A1P20849 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 MST1L-201ENST00000442552 2185 ntBASIC15.29■□□□□ 0.04
COL9A1P20849 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.29■□□□□ 0.04
COL9A1P20849 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC15.29■□□□□ 0.04
COL9A1P20849 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL9A1P20849 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
COL9A1P20849 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
COL9A1P20849 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.28■□□□□ 0.04
COL9A1P20849 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC15.28■□□□□ 0.04
COL9A1P20849 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15.28■□□□□ 0.04
COL9A1P20849 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC15.28■□□□□ 0.04
COL9A1P20849 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.28■□□□□ 0.04
COL9A1P20849 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
COL9A1P20849 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 RPS26-201ENST00000356464 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 NME4-203ENST00000397722 1232 ntTSL 2 BASIC15.28■□□□□ 0.04
COL9A1P20849 CFL1P6-201ENST00000400899 494 ntBASIC15.28■□□□□ 0.04
COL9A1P20849 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 RPL5P21-201ENST00000404620 815 ntBASIC15.28■□□□□ 0.04
COL9A1P20849 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC15.28■□□□□ 0.04
COL9A1P20849 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC15.28■□□□□ 0.04
COL9A1P20849 PAICSP2-201ENST00000429118 1150 ntBASIC15.28■□□□□ 0.04
COL9A1P20849 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC15.28■□□□□ 0.04
COL9A1P20849 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 AC108724.1-201ENST00000481669 352 ntBASIC15.28■□□□□ 0.04
COL9A1P20849 NDUFS6P1-201ENST00000485187 316 ntBASIC15.28■□□□□ 0.04
COL9A1P20849 AC026434.2-201ENST00000506094 1078 ntBASIC15.28■□□□□ 0.04
COL9A1P20849 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC15.28■□□□□ 0.04
COL9A1P20849 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC15.28■□□□□ 0.04
COL9A1P20849 AC090515.5-201ENST00000560378 526 ntTSL 5 BASIC15.28■□□□□ 0.04
COL9A1P20849 PHF23-213ENST00000613632 850 ntTSL 5 BASIC15.28■□□□□ 0.04
COL9A1P20849 AC090510.3-201ENST00000615831 821 ntBASIC15.28■□□□□ 0.04
COL9A1P20849 MIR6769A-201ENST00000617340 73 ntBASIC15.28■□□□□ 0.04
COL9A1P20849 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
COL9A1P20849 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.28■□□□□ 0.04
COL9A1P20849 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
COL9A1P20849 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC15.28■□□□□ 0.04
COL9A1P20849 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 AC084018.2-201ENST00000613093 2607 ntBASIC15.28■□□□□ 0.04
COL9A1P20849 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL9A1P20849 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15.28■□□□□ 0.04
COL9A1P20849 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL9A1P20849 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL9A1P20849 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms