Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC28.14■■■□□ 2.1
SHROOM4Q9ULL8 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
SHROOM4Q9ULL8 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC28.14■■■□□ 2.1
SHROOM4Q9ULL8 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC28.14■■■□□ 2.1
SHROOM4Q9ULL8 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
SHROOM4Q9ULL8 LINC00554-201ENST00000564841 3011 ntBASIC28.14■■■□□ 2.1
SHROOM4Q9ULL8 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.1
SHROOM4Q9ULL8 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC28.14■■■□□ 2.1
SHROOM4Q9ULL8 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
SHROOM4Q9ULL8 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
SHROOM4Q9ULL8 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC28.14■■■□□ 2.1
SHROOM4Q9ULL8 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
SHROOM4Q9ULL8 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
SHROOM4Q9ULL8 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
SHROOM4Q9ULL8 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC28.14■■■□□ 2.09
SHROOM4Q9ULL8 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC28.14■■■□□ 2.09
SHROOM4Q9ULL8 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC28.14■■■□□ 2.09
SHROOM4Q9ULL8 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC28.14■■■□□ 2.09
SHROOM4Q9ULL8 PHBP15-201ENST00000574228 665 ntBASIC28.14■■■□□ 2.09
SHROOM4Q9ULL8 AC244250.3-201ENST00000620749 366 ntBASIC28.14■■■□□ 2.09
SHROOM4Q9ULL8 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
SHROOM4Q9ULL8 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC28.14■■■□□ 2.09
SHROOM4Q9ULL8 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 AL008718.2-201ENST00000609206 1313 ntBASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 AL162727.3-201ENST00000635661 2787 ntBASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 AK6-201ENST00000380818 1183 ntTSL 2 BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 AL109837.1-201ENST00000603272 613 ntBASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
SHROOM4Q9ULL8 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 ABR-203ENST00000536794 2213 ntTSL 2 BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 AMT-204ENST00000427987 1646 ntTSL 5 BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 AC138035.3-201ENST00000622706 2791 ntBASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
SHROOM4Q9ULL8 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 TMBIM7P-203ENST00000641617 1718 ntBASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 AL512430.1-201ENST00000392575 860 ntBASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 AL357563.1-201ENST00000404728 395 ntBASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 MROH4P-201ENST00000431302 1578 ntBASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC28.11■■■□□ 2.09
SHROOM4Q9ULL8 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
SHROOM4Q9ULL8 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC28.1■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms