Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 MX1-218ENST00000619682 1980 ntTSL 5 BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CCDC140Q96MF4 AL513477.1-201ENST00000602865 2407 ntBASIC11.62□□□□□ -0.55
CCDC140Q96MF4 AC023908.3-201ENST00000564211 3047 ntBASIC11.62□□□□□ -0.55
CCDC140Q96MF4 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 CLUHP2-201ENST00000426660 1303 ntBASIC11.62□□□□□ -0.55
CCDC140Q96MF4 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 AMT-204ENST00000427987 1646 ntTSL 5 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 COPE-202ENST00000349893 948 ntTSL 2 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 GUK1-206ENST00000366723 845 ntTSL 5 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 EDF1-203ENST00000371649 790 ntTSL 2 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 AC092933.1-201ENST00000393644 945 ntBASIC11.62□□□□□ -0.55
CCDC140Q96MF4 PNKD-204ENST00000436005 978 ntTSL 5 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 BCRP2-202ENST00000447763 634 ntBASIC11.62□□□□□ -0.55
CCDC140Q96MF4 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 HNRNPA1P23-201ENST00000491091 1133 ntBASIC11.62□□□□□ -0.55
CCDC140Q96MF4 BCRP6-201ENST00000510112 632 ntBASIC11.62□□□□□ -0.55
CCDC140Q96MF4 BCRP7-201ENST00000511549 544 ntBASIC11.62□□□□□ -0.55
CCDC140Q96MF4 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 AC005225.4-201ENST00000557330 545 ntBASIC11.62□□□□□ -0.55
CCDC140Q96MF4 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 AC025279.2-201ENST00000569730 653 ntBASIC11.62□□□□□ -0.55
CCDC140Q96MF4 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 AC012645.4-201ENST00000610691 1061 ntBASIC11.62□□□□□ -0.55
CCDC140Q96MF4 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 AC005912.2-201ENST00000619492 2400 ntBASIC11.62□□□□□ -0.55
CCDC140Q96MF4 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 AC126755.1-201ENST00000525846 6405 ntBASIC11.62□□□□□ -0.55
CCDC140Q96MF4 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 FES-203ENST00000394302 2133 ntTSL 5 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
CCDC140Q96MF4 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 MPI-203ENST00000535694 1523 ntTSL 2 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CCDC140Q96MF4 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms