Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 NUS1P3-201ENST00000423502 862 ntBASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 KLF2P4-201ENST00000451959 1225 ntBASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 MFF-223ENST00000524634 647 ntTSL 2 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 AL157414.3-201ENST00000624276 1954 ntBASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC17.98■□□□□ 0.47
CHMP4CQ96CF2 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 TEX30-203ENST00000376022 828 ntTSL 2 BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 AL590640.2-201ENST00000457038 527 ntBASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 AC009486.1-201ENST00000569860 813 ntBASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 AC145423.3-201ENST00000615987 467 ntBASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 BX539320.1-201ENST00000623759 877 ntBASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 LINC00528-201ENST00000600723 2160 ntBASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 REXO1L6P-201ENST00000603433 1515 ntBASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 REXO1L5P-201ENST00000622260 2098 ntBASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CHMP4CQ96CF2 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 ZBTB12BP-201ENST00000314232 1122 ntBASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms