Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 CYGB-203ENST00000589145 788 ntTSL 3 BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.66■□□□□ 0.42
NKX2-3Q8TAU0 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 AP001267.2-201ENST00000532619 2086 ntBASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 KRT8P4-201ENST00000509735 1454 ntBASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 AC008267.1-201ENST00000474858 1069 ntBASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 RNF41-210ENST00000552244 716 ntTSL 3 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 AL451050.2-201ENST00000606967 682 ntBASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 AC138649.2-201ENST00000615886 705 ntBASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 AL603764.1-201ENST00000636452 321 ntBASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NKX2-3Q8TAU0 AP000593.2-201ENST00000542775 1433 ntBASIC17.64■□□□□ 0.42
NKX2-3Q8TAU0 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 AL354989.2-201ENST00000435838 1540 ntBASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 SNX21-203ENST00000372541 771 ntTSL 2 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 FTLP10-202ENST00000505798 471 ntBASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 RN7SL713P-201ENST00000582127 302 ntBASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 AL358472.3-201ENST00000608147 415 ntBASIC17.64■□□□□ 0.41
NKX2-3Q8TAU0 AP001505.2-201ENST00000616815 443 ntBASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms