Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC14□□□□□ -0.17
BEST3Q8N1M1 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
BEST3Q8N1M1 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
BEST3Q8N1M1 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
BEST3Q8N1M1 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14□□□□□ -0.17
BEST3Q8N1M1 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
BEST3Q8N1M1 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
BEST3Q8N1M1 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC14□□□□□ -0.17
BEST3Q8N1M1 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
BEST3Q8N1M1 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14□□□□□ -0.17
BEST3Q8N1M1 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14□□□□□ -0.17
BEST3Q8N1M1 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14□□□□□ -0.17
BEST3Q8N1M1 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
BEST3Q8N1M1 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14□□□□□ -0.17
BEST3Q8N1M1 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14□□□□□ -0.17
BEST3Q8N1M1 REXO1L5P-201ENST00000622260 2098 ntBASIC14□□□□□ -0.17
BEST3Q8N1M1 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14□□□□□ -0.17
BEST3Q8N1M1 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
BEST3Q8N1M1 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
BEST3Q8N1M1 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14□□□□□ -0.17
BEST3Q8N1M1 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
BEST3Q8N1M1 AC138035.3-201ENST00000622706 2791 ntBASIC14□□□□□ -0.17
BEST3Q8N1M1 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
BEST3Q8N1M1 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 AC055811.4-201ENST00000624039 1754 ntBASIC13.99□□□□□ -0.17
BEST3Q8N1M1 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 NME2-201ENST00000393183 568 ntTSL 2 BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 AC104457.1-201ENST00000401024 814 ntBASIC13.99□□□□□ -0.17
BEST3Q8N1M1 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 HLA-K-203ENST00000430151 1046 ntBASIC13.99□□□□□ -0.17
BEST3Q8N1M1 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 NOP2-211ENST00000540228 668 ntTSL 2 BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
BEST3Q8N1M1 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 FAM8A4P-201ENST00000435433 1213 ntBASIC13.98□□□□□ -0.17
BEST3Q8N1M1 GOLGA2P4-201ENST00000441462 777 ntBASIC13.98□□□□□ -0.17
BEST3Q8N1M1 HOMER2P2-201ENST00000451621 847 ntBASIC13.98□□□□□ -0.17
BEST3Q8N1M1 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 ACR-203ENST00000529621 708 ntTSL 5 BASIC13.98□□□□□ -0.17
BEST3Q8N1M1 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms