Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
USP39Q53GS9 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.28■□□□□ 0.04
USP39Q53GS9 AC009090.5-201ENST00000624886 2285 ntBASIC15.28■□□□□ 0.04
USP39Q53GS9 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.28■□□□□ 0.04
USP39Q53GS9 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
USP39Q53GS9 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.28■□□□□ 0.04
USP39Q53GS9 FXNP2-201ENST00000411625 547 ntBASIC15.28■□□□□ 0.04
USP39Q53GS9 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC15.28■□□□□ 0.04
USP39Q53GS9 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
USP39Q53GS9 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC15.28■□□□□ 0.04
USP39Q53GS9 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 AC021723.1-201ENST00000486306 515 ntBASIC15.28■□□□□ 0.04
USP39Q53GS9 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15.28■□□□□ 0.04
USP39Q53GS9 AC005740.2-201ENST00000511085 419 ntBASIC15.28■□□□□ 0.04
USP39Q53GS9 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC15.28■□□□□ 0.04
USP39Q53GS9 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 AC022616.1-201ENST00000518688 554 ntBASIC15.28■□□□□ 0.04
USP39Q53GS9 CHMP4BP1-201ENST00000556017 588 ntBASIC15.28■□□□□ 0.04
USP39Q53GS9 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 AC091544.8-201ENST00000619490 361 ntBASIC15.28■□□□□ 0.04
USP39Q53GS9 MIR6727-201ENST00000620702 65 ntBASIC15.28■□□□□ 0.04
USP39Q53GS9 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15.28■□□□□ 0.04
USP39Q53GS9 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC15.28■□□□□ 0.04
USP39Q53GS9 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
USP39Q53GS9 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
USP39Q53GS9 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
USP39Q53GS9 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.28■□□□□ 0.04
USP39Q53GS9 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.28■□□□□ 0.04
USP39Q53GS9 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
USP39Q53GS9 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 AL158070.2-201ENST00000623713 1621 ntBASIC15.28■□□□□ 0.04
USP39Q53GS9 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.28■□□□□ 0.04
USP39Q53GS9 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
USP39Q53GS9 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC15.27■□□□□ 0.04
USP39Q53GS9 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.27■□□□□ 0.04
USP39Q53GS9 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
USP39Q53GS9 KRT8P4-201ENST00000509735 1454 ntBASIC15.27■□□□□ 0.04
USP39Q53GS9 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.27■□□□□ 0.04
USP39Q53GS9 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.27■□□□□ 0.04
USP39Q53GS9 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
USP39Q53GS9 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
USP39Q53GS9 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.27■□□□□ 0.04
USP39Q53GS9 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.27■□□□□ 0.04
USP39Q53GS9 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
USP39Q53GS9 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
USP39Q53GS9 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
USP39Q53GS9 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC15.27■□□□□ 0.04
USP39Q53GS9 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
USP39Q53GS9 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
USP39Q53GS9 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.27■□□□□ 0.04
USP39Q53GS9 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.04
USP39Q53GS9 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
USP39Q53GS9 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
USP39Q53GS9 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.27■□□□□ 0.04
USP39Q53GS9 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC15.27■□□□□ 0.04
USP39Q53GS9 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC15.27■□□□□ 0.04
USP39Q53GS9 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC15.27■□□□□ 0.04
USP39Q53GS9 IMP3P2-201ENST00000489760 475 ntBASIC15.27■□□□□ 0.04
USP39Q53GS9 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC15.27■□□□□ 0.04
USP39Q53GS9 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC15.27■□□□□ 0.04
USP39Q53GS9 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC15.27■□□□□ 0.04
USP39Q53GS9 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC15.27■□□□□ 0.04
USP39Q53GS9 AC097724.1-201ENST00000609581 426 ntBASIC15.27■□□□□ 0.04
USP39Q53GS9 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC15.27■□□□□ 0.04
USP39Q53GS9 AL023803.2-201ENST00000620080 638 ntBASIC15.27■□□□□ 0.04
USP39Q53GS9 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
USP39Q53GS9 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC15.27■□□□□ 0.04
USP39Q53GS9 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC15.27■□□□□ 0.04
USP39Q53GS9 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
USP39Q53GS9 AL603764.1-201ENST00000636452 321 ntBASIC15.27■□□□□ 0.04
USP39Q53GS9 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
USP39Q53GS9 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
USP39Q53GS9 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
USP39Q53GS9 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
USP39Q53GS9 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
USP39Q53GS9 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
USP39Q53GS9 AC112693.3-201ENST00000624819 1983 ntBASIC15.27■□□□□ 0.03
USP39Q53GS9 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
USP39Q53GS9 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.27■□□□□ 0.03
USP39Q53GS9 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms