Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 LINC00682-202ENST00000499082 1384 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
HSPG2P98160 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC8.93□□□□□ -0.98
HSPG2P98160 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
HSPG2P98160 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC8.93□□□□□ -0.98
HSPG2P98160 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC8.93□□□□□ -0.98
HSPG2P98160 ODCP-201ENST00000459650 1639 ntBASIC8.93□□□□□ -0.98
HSPG2P98160 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC8.93□□□□□ -0.98
HSPG2P98160 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC8.93□□□□□ -0.98
HSPG2P98160 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC8.93□□□□□ -0.98
HSPG2P98160 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC8.93□□□□□ -0.98
HSPG2P98160 RRNAD1-204ENST00000476229 1096 ntTSL 5 BASIC8.93□□□□□ -0.98
HSPG2P98160 PRSS3P1-201ENST00000503996 742 ntBASIC8.93□□□□□ -0.98
HSPG2P98160 IGHVIII-5-2-201ENST00000522505 261 ntBASIC8.93□□□□□ -0.98
HSPG2P98160 AC024405.2-201ENST00000528459 810 ntTSL 5 BASIC8.93□□□□□ -0.98
HSPG2P98160 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC8.93□□□□□ -0.98
HSPG2P98160 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC8.93□□□□□ -0.98
HSPG2P98160 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC8.93□□□□□ -0.98
HSPG2P98160 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC8.93□□□□□ -0.98
HSPG2P98160 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC8.93□□□□□ -0.98
HSPG2P98160 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC8.93□□□□□ -0.98
HSPG2P98160 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC8.93□□□□□ -0.98
HSPG2P98160 SALL4P5-201ENST00000419001 1760 ntBASIC8.93□□□□□ -0.98
HSPG2P98160 CES3-203ENST00000543856 3178 ntTSL 2 BASIC8.93□□□□□ -0.98
HSPG2P98160 AC024909.3-201ENST00000611513 2257 ntBASIC8.93□□□□□ -0.98
HSPG2P98160 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC8.93□□□□□ -0.98
HSPG2P98160 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC8.92□□□□□ -0.98
HSPG2P98160 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 MED15P3-201ENST00000413613 326 ntBASIC8.92□□□□□ -0.98
HSPG2P98160 HNRNPA1P10-201ENST00000444945 962 ntBASIC8.92□□□□□ -0.98
HSPG2P98160 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC8.92□□□□□ -0.98
HSPG2P98160 PEBP1P3-201ENST00000455475 548 ntBASIC8.92□□□□□ -0.98
HSPG2P98160 AC008026.2-201ENST00000495438 348 ntBASIC8.92□□□□□ -0.98
HSPG2P98160 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC8.92□□□□□ -0.98
HSPG2P98160 SIGLEC22P-201ENST00000599104 714 ntBASIC8.92□□□□□ -0.98
HSPG2P98160 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC8.92□□□□□ -0.98
HSPG2P98160 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC8.92□□□□□ -0.98
HSPG2P98160 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC8.92□□□□□ -0.98
HSPG2P98160 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC8.92□□□□□ -0.98
HSPG2P98160 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC8.92□□□□□ -0.98
HSPG2P98160 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC8.92□□□□□ -0.98
HSPG2P98160 MTHFR-217ENST00000641820 1569 ntBASIC8.92□□□□□ -0.98
HSPG2P98160 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 LINC01101-201ENST00000622953 1884 ntBASIC8.92□□□□□ -0.98
HSPG2P98160 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC8.92□□□□□ -0.98
HSPG2P98160 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 MIR181D-201ENST00000384853 137 ntBASIC8.92□□□□□ -0.98
HSPG2P98160 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC8.92□□□□□ -0.98
HSPG2P98160 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC8.92□□□□□ -0.98
HSPG2P98160 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC8.92□□□□□ -0.98
HSPG2P98160 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC8.92□□□□□ -0.98
HSPG2P98160 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC8.92□□□□□ -0.98
HSPG2P98160 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC8.92□□□□□ -0.98
HSPG2P98160 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC8.92□□□□□ -0.98
HSPG2P98160 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC8.92□□□□□ -0.98
HSPG2P98160 SHMT1P1-201ENST00000419974 1312 ntBASIC8.92□□□□□ -0.98
HSPG2P98160 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC8.92□□□□□ -0.98
HSPG2P98160 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC8.92□□□□□ -0.98
HSPG2P98160 CDKN2A-AS1-201ENST00000441769 823 ntBASIC8.92□□□□□ -0.98
HSPG2P98160 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC8.92□□□□□ -0.98
HSPG2P98160 FAM86JP-202ENST00000484500 988 ntBASIC8.92□□□□□ -0.98
HSPG2P98160 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC8.92□□□□□ -0.98
HSPG2P98160 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC8.92□□□□□ -0.98
HSPG2P98160 AC005746.2-201ENST00000585765 470 ntTSL 5 BASIC8.92□□□□□ -0.98
HSPG2P98160 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 AC112220.4-201ENST00000604982 1263 ntBASIC8.92□□□□□ -0.98
HSPG2P98160 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC8.92□□□□□ -0.98
HSPG2P98160 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC8.92□□□□□ -0.98
HSPG2P98160 AC010491.1-201ENST00000563101 2797 ntBASIC8.92□□□□□ -0.98
HSPG2P98160 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC8.92□□□□□ -0.98
HSPG2P98160 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC8.92□□□□□ -0.98
HSPG2P98160 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 AL596087.1-201ENST00000400979 1969 ntBASIC8.92□□□□□ -0.98
HSPG2P98160 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC8.92□□□□□ -0.98
HSPG2P98160 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
HSPG2P98160 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
HSPG2P98160 KRT18P44-201ENST00000416086 1285 ntBASIC8.91□□□□□ -0.98
HSPG2P98160 AC026884.1-201ENST00000418296 457 ntBASIC8.91□□□□□ -0.98
HSPG2P98160 AC078882.1-201ENST00000436132 416 ntTSL 2 BASIC8.91□□□□□ -0.98
HSPG2P98160 AC147876.1-201ENST00000504408 322 ntBASIC8.91□□□□□ -0.98
HSPG2P98160 MYL6-215ENST00000549566 685 ntTSL 2 BASIC8.91□□□□□ -0.98
HSPG2P98160 ZFYVE1-206ENST00000555072 1225 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
HSPG2P98160 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC8.91□□□□□ -0.98
HSPG2P98160 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC8.91□□□□□ -0.98
HSPG2P98160 AC126755.5-201ENST00000622756 267 ntBASIC8.91□□□□□ -0.98
HSPG2P98160 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC8.91□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms