Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL18A1P39060 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL18A1P39060 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL18A1P39060 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL18A1P39060 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL18A1P39060 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL18A1P39060 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC19.14■□□□□ 0.65
COL18A1P39060 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC19.14■□□□□ 0.65
COL18A1P39060 CTBP2P8-201ENST00000422584 1330 ntBASIC19.14■□□□□ 0.65
COL18A1P39060 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL18A1P39060 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC19.14■□□□□ 0.65
COL18A1P39060 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC19.14■□□□□ 0.65
COL18A1P39060 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
COL18A1P39060 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL18A1P39060 LINC00265-2P-201ENST00000413372 782 ntBASIC19.14■□□□□ 0.65
COL18A1P39060 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL18A1P39060 FAU-202ENST00000434372 533 ntTSL 2 BASIC19.14■□□□□ 0.65
COL18A1P39060 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL18A1P39060 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC19.14■□□□□ 0.65
COL18A1P39060 AC012158.2-201ENST00000536546 354 ntBASIC19.14■□□□□ 0.65
COL18A1P39060 AC013553.1-201ENST00000560906 267 ntBASIC19.14■□□□□ 0.65
COL18A1P39060 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC19.14■□□□□ 0.65
COL18A1P39060 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC19.14■□□□□ 0.65
COL18A1P39060 LINC00244-201ENST00000625073 613 ntBASIC19.14■□□□□ 0.65
COL18A1P39060 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC19.14■□□□□ 0.65
COL18A1P39060 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL18A1P39060 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL18A1P39060 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
COL18A1P39060 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL18A1P39060 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL18A1P39060 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL18A1P39060 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
COL18A1P39060 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
COL18A1P39060 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL18A1P39060 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL18A1P39060 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC19.13■□□□□ 0.65
COL18A1P39060 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL18A1P39060 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL18A1P39060 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL18A1P39060 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL18A1P39060 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL18A1P39060 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL18A1P39060 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL18A1P39060 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL18A1P39060 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
COL18A1P39060 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC19.13■□□□□ 0.65
COL18A1P39060 RNA5SP406-201ENST00000516106 112 ntBASIC19.13■□□□□ 0.65
COL18A1P39060 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL18A1P39060 COX5A-205ENST00000568517 582 ntTSL 3 BASIC19.13■□□□□ 0.65
COL18A1P39060 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC19.13■□□□□ 0.65
COL18A1P39060 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC19.13■□□□□ 0.65
COL18A1P39060 AC021016.3-201ENST00000608367 477 ntBASIC19.13■□□□□ 0.65
COL18A1P39060 MX1-218ENST00000619682 1980 ntTSL 5 BASIC19.13■□□□□ 0.65
COL18A1P39060 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC19.13■□□□□ 0.65
COL18A1P39060 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL18A1P39060 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL18A1P39060 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC19.13■□□□□ 0.65
COL18A1P39060 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC19.13■□□□□ 0.65
COL18A1P39060 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
COL18A1P39060 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC19.12■□□□□ 0.65
COL18A1P39060 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL18A1P39060 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL18A1P39060 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL18A1P39060 FAM90A21P-201ENST00000510875 1396 ntBASIC19.12■□□□□ 0.65
COL18A1P39060 FAM90A15P-201ENST00000514465 1395 ntBASIC19.12■□□□□ 0.65
COL18A1P39060 FAM90A6P-201ENST00000515148 1394 ntBASIC19.12■□□□□ 0.65
COL18A1P39060 FAM90A16P-201ENST00000526662 1395 ntBASIC19.12■□□□□ 0.65
COL18A1P39060 FAM90A9P-201ENST00000527940 1395 ntBASIC19.12■□□□□ 0.65
COL18A1P39060 FAM90A5P-201ENST00000528738 1395 ntBASIC19.12■□□□□ 0.65
COL18A1P39060 FAM90A14P-201ENST00000530386 1395 ntBASIC19.12■□□□□ 0.65
COL18A1P39060 FAM90A13P-201ENST00000534703 1395 ntBASIC19.12■□□□□ 0.65
COL18A1P39060 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
COL18A1P39060 AL162727.3-201ENST00000635661 2787 ntBASIC19.12■□□□□ 0.65
COL18A1P39060 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC19.12■□□□□ 0.65
COL18A1P39060 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC19.12■□□□□ 0.65
COL18A1P39060 ACTBP7-201ENST00000418351 1124 ntBASIC19.12■□□□□ 0.65
COL18A1P39060 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL18A1P39060 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC19.12■□□□□ 0.65
COL18A1P39060 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC19.12■□□□□ 0.65
COL18A1P39060 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
COL18A1P39060 MT2A-202ENST00000561491 581 ntTSL 2 BASIC19.12■□□□□ 0.65
COL18A1P39060 AP003392.6-201ENST00000607709 325 ntBASIC19.12■□□□□ 0.65
COL18A1P39060 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL18A1P39060 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL18A1P39060 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC19.12■□□□□ 0.65
COL18A1P39060 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL18A1P39060 AC011270.2-201ENST00000624293 2550 ntBASIC19.12■□□□□ 0.65
COL18A1P39060 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.12■□□□□ 0.65
COL18A1P39060 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
COL18A1P39060 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL18A1P39060 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL18A1P39060 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
COL18A1P39060 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC19.11■□□□□ 0.65
COL18A1P39060 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC19.11■□□□□ 0.65
COL18A1P39060 RN7SL788P-201ENST00000460504 316 ntBASIC19.11■□□□□ 0.65
COL18A1P39060 RN7SL494P-201ENST00000461517 304 ntBASIC19.11■□□□□ 0.65
COL18A1P39060 AC005740.1-201ENST00000515639 522 ntBASIC19.11■□□□□ 0.65
COL18A1P39060 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.11■□□□□ 0.65
COL18A1P39060 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC19.11■□□□□ 0.65
COL18A1P39060 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 184.1 ms