Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 STUB1-204ENST00000564370 875 ntTSL 2 BASIC13.12□□□□□ -0.31
COL8A1P27658 MIR5196-201ENST00000578146 115 ntBASIC13.12□□□□□ -0.31
COL8A1P27658 AL358472.3-201ENST00000608147 415 ntBASIC13.12□□□□□ -0.31
COL8A1P27658 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC13.12□□□□□ -0.31
COL8A1P27658 AC138466.3-201ENST00000619983 221 ntBASIC13.12□□□□□ -0.31
COL8A1P27658 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC13.12□□□□□ -0.31
COL8A1P27658 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC13.12□□□□□ -0.31
COL8A1P27658 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC13.12□□□□□ -0.31
COL8A1P27658 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC13.12□□□□□ -0.31
COL8A1P27658 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC13.12□□□□□ -0.31
COL8A1P27658 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
COL8A1P27658 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC13.12□□□□□ -0.31
COL8A1P27658 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 AL596257.1-201ENST00000641463 2694 ntBASIC13.12□□□□□ -0.31
COL8A1P27658 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC13.12□□□□□ -0.31
COL8A1P27658 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC13.12□□□□□ -0.31
COL8A1P27658 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC13.12□□□□□ -0.31
COL8A1P27658 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC13.11□□□□□ -0.31
COL8A1P27658 BANP-204ENST00000393208 2283 ntTSL 2 BASIC13.11□□□□□ -0.31
COL8A1P27658 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC13.11□□□□□ -0.31
COL8A1P27658 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
COL8A1P27658 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
COL8A1P27658 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 CYP2T1P-202ENST00000641596 2535 ntBASIC13.11□□□□□ -0.31
COL8A1P27658 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
COL8A1P27658 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 FAM90A2P-201ENST00000511144 1395 ntBASIC13.11□□□□□ -0.31
COL8A1P27658 FAM90A25P-201ENST00000528404 1395 ntBASIC13.11□□□□□ -0.31
COL8A1P27658 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
COL8A1P27658 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC13.11□□□□□ -0.31
COL8A1P27658 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
COL8A1P27658 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 SOD2-202ENST00000367054 815 ntTSL 2 BASIC13.11□□□□□ -0.31
COL8A1P27658 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.11□□□□□ -0.31
COL8A1P27658 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC13.11□□□□□ -0.31
COL8A1P27658 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC13.11□□□□□ -0.31
COL8A1P27658 AL592076.1-201ENST00000424448 303 ntBASIC13.11□□□□□ -0.31
COL8A1P27658 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 DDX39AP1-201ENST00000445147 1181 ntBASIC13.11□□□□□ -0.31
COL8A1P27658 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
COL8A1P27658 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC13.11□□□□□ -0.31
COL8A1P27658 ALG1L6P-201ENST00000515248 758 ntBASIC13.11□□□□□ -0.31
COL8A1P27658 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC13.11□□□□□ -0.31
COL8A1P27658 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC13.11□□□□□ -0.31
COL8A1P27658 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC13.11□□□□□ -0.31
COL8A1P27658 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.11□□□□□ -0.31
COL8A1P27658 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC13.11□□□□□ -0.31
COL8A1P27658 AC009955.4-201ENST00000597192 544 ntBASIC13.11□□□□□ -0.31
COL8A1P27658 AC107464.3-201ENST00000609172 737 ntBASIC13.11□□□□□ -0.31
COL8A1P27658 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC13.11□□□□□ -0.31
COL8A1P27658 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC13.11□□□□□ -0.31
COL8A1P27658 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
COL8A1P27658 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC13.11□□□□□ -0.31
COL8A1P27658 MFF-204ENST00000353339 2186 ntTSL 5 BASIC13.11□□□□□ -0.31
COL8A1P27658 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC13.11□□□□□ -0.31
COL8A1P27658 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC13.11□□□□□ -0.31
COL8A1P27658 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC13.11□□□□□ -0.31
COL8A1P27658 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC13.11□□□□□ -0.31
COL8A1P27658 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC13.11□□□□□ -0.31
COL8A1P27658 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
COL8A1P27658 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL8A1P27658 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC13.11□□□□□ -0.31
COL8A1P27658 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL8A1P27658 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms