Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RNVU1-8-201ENST00000364272 125 ntBASIC18.29■□□□□ 0.52
COL5A3P25940 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL5A3P25940 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC18.29■□□□□ 0.52
COL5A3P25940 AC027139.1-201ENST00000565286 951 ntBASIC18.29■□□□□ 0.52
COL5A3P25940 AC021016.3-201ENST00000608367 477 ntBASIC18.29■□□□□ 0.52
COL5A3P25940 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC18.29■□□□□ 0.52
COL5A3P25940 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL5A3P25940 FAM90A21P-201ENST00000510875 1396 ntBASIC18.29■□□□□ 0.52
COL5A3P25940 FAM90A15P-201ENST00000514465 1395 ntBASIC18.29■□□□□ 0.52
COL5A3P25940 FAM90A6P-201ENST00000515148 1394 ntBASIC18.29■□□□□ 0.52
COL5A3P25940 FAM90A16P-201ENST00000526662 1395 ntBASIC18.29■□□□□ 0.52
COL5A3P25940 FAM90A9P-201ENST00000527940 1395 ntBASIC18.29■□□□□ 0.52
COL5A3P25940 FAM90A5P-201ENST00000528738 1395 ntBASIC18.29■□□□□ 0.52
COL5A3P25940 FAM90A14P-201ENST00000530386 1395 ntBASIC18.29■□□□□ 0.52
COL5A3P25940 FAM90A13P-201ENST00000534703 1395 ntBASIC18.29■□□□□ 0.52
COL5A3P25940 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL5A3P25940 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL5A3P25940 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL5A3P25940 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC18.28■□□□□ 0.52
COL5A3P25940 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC18.28■□□□□ 0.52
COL5A3P25940 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL5A3P25940 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
COL5A3P25940 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
COL5A3P25940 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL5A3P25940 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL5A3P25940 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL5A3P25940 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL5A3P25940 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC18.28■□□□□ 0.52
COL5A3P25940 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL5A3P25940 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
COL5A3P25940 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL5A3P25940 SURF4-203ENST00000371991 715 ntTSL 3 BASIC18.28■□□□□ 0.52
COL5A3P25940 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
COL5A3P25940 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
COL5A3P25940 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC18.28■□□□□ 0.52
COL5A3P25940 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC18.28■□□□□ 0.52
COL5A3P25940 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
COL5A3P25940 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
COL5A3P25940 MT2A-202ENST00000561491 581 ntTSL 2 BASIC18.28■□□□□ 0.52
COL5A3P25940 AP005264.6-204ENST00000588436 719 ntBASIC18.28■□□□□ 0.52
COL5A3P25940 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL5A3P25940 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL5A3P25940 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.28■□□□□ 0.52
COL5A3P25940 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
COL5A3P25940 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC18.28■□□□□ 0.52
COL5A3P25940 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A3P25940 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A3P25940 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A3P25940 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A3P25940 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
COL5A3P25940 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A3P25940 ACTG1P19-201ENST00000418987 1116 ntBASIC18.27■□□□□ 0.52
COL5A3P25940 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC18.27■□□□□ 0.52
COL5A3P25940 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
COL5A3P25940 RPL35P9-201ENST00000446059 350 ntBASIC18.27■□□□□ 0.52
COL5A3P25940 AC006529.1-201ENST00000459978 637 ntBASIC18.27■□□□□ 0.52
COL5A3P25940 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC18.27■□□□□ 0.52
COL5A3P25940 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC18.27■□□□□ 0.52
COL5A3P25940 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC18.27■□□□□ 0.52
COL5A3P25940 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC18.27■□□□□ 0.52
COL5A3P25940 HMGB1P24-201ENST00000611897 328 ntBASIC18.27■□□□□ 0.52
COL5A3P25940 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
COL5A3P25940 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
COL5A3P25940 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
COL5A3P25940 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL5A3P25940 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
COL5A3P25940 AL162727.3-201ENST00000635661 2787 ntBASIC18.27■□□□□ 0.51
COL5A3P25940 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC18.27■□□□□ 0.51
COL5A3P25940 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL5A3P25940 AC117503.4-201ENST00000623229 1418 ntBASIC18.27■□□□□ 0.51
COL5A3P25940 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
COL5A3P25940 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A3P25940 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A3P25940 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
COL5A3P25940 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC18.26■□□□□ 0.51
COL5A3P25940 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
COL5A3P25940 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A3P25940 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC18.26■□□□□ 0.51
COL5A3P25940 AC026470.1-201ENST00000478038 846 ntBASIC18.26■□□□□ 0.51
COL5A3P25940 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC18.26■□□□□ 0.51
COL5A3P25940 RNA5SP406-201ENST00000516106 112 ntBASIC18.26■□□□□ 0.51
COL5A3P25940 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
COL5A3P25940 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A3P25940 AC226150.1-201ENST00000544259 466 ntBASIC18.26■□□□□ 0.51
COL5A3P25940 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC18.26■□□□□ 0.51
COL5A3P25940 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC18.26■□□□□ 0.51
COL5A3P25940 AC055811.3-201ENST00000584952 686 ntBASIC18.26■□□□□ 0.51
COL5A3P25940 LINC00244-201ENST00000625073 613 ntBASIC18.26■□□□□ 0.51
COL5A3P25940 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC18.26■□□□□ 0.51
COL5A3P25940 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC18.26■□□□□ 0.51
COL5A3P25940 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A3P25940 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A3P25940 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A3P25940 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
COL5A3P25940 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
COL5A3P25940 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A3P25940 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A3P25940 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A3P25940 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL5A3P25940 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms