Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC15.11■□□□□ 0.01
VCANP13611 AC133540.1-201ENST00000620845 1019 ntBASIC15.11■□□□□ 0.01
VCANP13611 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC15.11■□□□□ 0.01
VCANP13611 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC15.11■□□□□ 0.01
VCANP13611 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC15.11■□□□□ 0.01
VCANP13611 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VCANP13611 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC15.11■□□□□ 0.01
VCANP13611 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
VCANP13611 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VCANP13611 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.11■□□□□ 0.01
VCANP13611 WASH3P-207ENST00000560956 1394 ntBASIC15.11■□□□□ 0.01
VCANP13611 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VCANP13611 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
VCANP13611 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC15.1■□□□□ 0.01
VCANP13611 ZNRD1-204ENST00000376785 754 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
VCANP13611 POU5F1-207ENST00000606567 1236 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VCANP13611 AC245369.7-201ENST00000631386 350 ntBASIC15.1■□□□□ 0.01
VCANP13611 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VCANP13611 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
VCANP13611 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.1■□□□□ 0.01
VCANP13611 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.1■□□□□ 0.01
VCANP13611 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.1■□□□□ 0.01
VCANP13611 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC15.1■□□□□ 0.01
VCANP13611 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.1■□□□□ 0.01
VCANP13611 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VCANP13611 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
VCANP13611 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
VCANP13611 PRDX2-202ENST00000334482 784 ntTSL 3 BASIC15.1■□□□□ 0.01
VCANP13611 PIFO-201ENST00000369737 746 ntTSL 2 BASIC15.1■□□□□ 0.01
VCANP13611 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC15.1■□□□□ 0.01
VCANP13611 AC026884.1-201ENST00000418296 457 ntBASIC15.1■□□□□ 0.01
VCANP13611 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC15.1■□□□□ 0.01
VCANP13611 RGS5-216ENST00000449680 788 ntTSL 3 BASIC15.1■□□□□ 0.01
VCANP13611 RN7SL340P-201ENST00000470792 296 ntBASIC15.1■□□□□ 0.01
VCANP13611 ISL1-203ENST00000511384 981 ntTSL 5 BASIC15.1■□□□□ 0.01
VCANP13611 DLK1-205ENST00000556051 469 ntTSL 2 BASIC15.1■□□□□ 0.01
VCANP13611 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC15.1■□□□□ 0.01
VCANP13611 AC022001.3-201ENST00000606330 596 ntBASIC15.1■□□□□ 0.01
VCANP13611 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC15.1■□□□□ 0.01
VCANP13611 PAX6-238ENST00000638755 1161 ntTSL 5 BASIC15.1■□□□□ 0.01
VCANP13611 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.1■□□□□ 0.01
VCANP13611 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VCANP13611 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
VCANP13611 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
VCANP13611 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VCANP13611 AC006504.5-208ENST00000588784 2401 ntBASIC15.1■□□□□ 0.01
VCANP13611 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VCANP13611 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VCANP13611 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
VCANP13611 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
VCANP13611 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.1■□□□□ 0.01
VCANP13611 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC15.1■□□□□ 0.01
VCANP13611 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC15.1■□□□□ 0.01
VCANP13611 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VCANP13611 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VCANP13611 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC15.1■□□□□ 0.01
VCANP13611 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.1■□□□□ 0.01
VCANP13611 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
VCANP13611 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VCANP13611 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VCANP13611 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC15.09■□□□□ 0.01
VCANP13611 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VCANP13611 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.09■□□□□ 0.01
VCANP13611 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VCANP13611 AL360270.3-201ENST00000609118 1348 ntBASIC15.09■□□□□ 0.01
VCANP13611 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC15.09■□□□□ 0.01
VCANP13611 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
VCANP13611 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
VCANP13611 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.09■□□□□ 0.01
VCANP13611 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VCANP13611 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC15.09■□□□□ 0.01
VCANP13611 AL157823.1-201ENST00000403727 628 ntBASIC15.09■□□□□ 0.01
VCANP13611 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC15.09■□□□□ 0.01
VCANP13611 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC15.09■□□□□ 0.01
VCANP13611 MIR4746-201ENST00000579802 71 ntBASIC15.09■□□□□ 0.01
VCANP13611 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
VCANP13611 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VCANP13611 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC15.09■□□□□ 0.01
VCANP13611 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.09■□□□□ 0.01
VCANP13611 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VCANP13611 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
VCANP13611 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VCANP13611 AL773545.2-201ENST00000442149 472 ntBASIC15.09■□□□□ 0.01
VCANP13611 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC15.09■□□□□ 0.01
VCANP13611 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC15.09■□□□□ 0.01
VCANP13611 PFN2-212ENST00000490975 858 ntTSL 4 BASIC15.09■□□□□ 0.01
VCANP13611 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
VCANP13611 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC15.09■□□□□ 0.01
VCANP13611 AL591424.3-201ENST00000614278 872 ntBASIC15.09■□□□□ 0.01
VCANP13611 PCDHA1-201ENST00000378133 2726 ntBASIC15.09■□□□□ 0.01
VCANP13611 AC006372.4-201ENST00000624122 1543 ntBASIC15.09■□□□□ 0.01
VCANP13611 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.09■□□□□ 0.01
VCANP13611 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
VCANP13611 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.09■□□□□ 0.01
VCANP13611 AC012370.2-204ENST00000601940 1320 ntTSL 5 BASIC15.09■□□□□ 0.01
VCANP13611 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VCANP13611 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
VCANP13611 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
VCANP13611 RN7SKP230-201ENST00000365642 335 ntBASIC15.08■□□□□ 0.01
VCANP13611 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC15.08■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms