Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
COL3A1P02461 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC19.43■□□□□ 0.7
COL3A1P02461 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC19.43■□□□□ 0.7
COL3A1P02461 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC19.43■□□□□ 0.7
COL3A1P02461 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL3A1P02461 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL3A1P02461 RNA5SP359-201ENST00000364838 113 ntBASIC19.42■□□□□ 0.7
COL3A1P02461 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC19.42■□□□□ 0.7
COL3A1P02461 NME6-203ENST00000415644 849 ntTSL 2 BASIC19.42■□□□□ 0.7
COL3A1P02461 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC19.42■□□□□ 0.7
COL3A1P02461 AC092580.1-201ENST00000433998 658 ntBASIC19.42■□□□□ 0.7
COL3A1P02461 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC19.42■□□□□ 0.7
COL3A1P02461 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC19.42■□□□□ 0.7
COL3A1P02461 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL3A1P02461 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC19.42■□□□□ 0.7
COL3A1P02461 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC19.42■□□□□ 0.7
COL3A1P02461 AL161670.2-201ENST00000557650 1227 ntBASIC19.42■□□□□ 0.7
COL3A1P02461 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL3A1P02461 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC19.42■□□□□ 0.7
COL3A1P02461 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC19.42■□□□□ 0.7
COL3A1P02461 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC19.42■□□□□ 0.7
COL3A1P02461 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
COL3A1P02461 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL3A1P02461 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL3A1P02461 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC19.42■□□□□ 0.7
COL3A1P02461 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL3A1P02461 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL3A1P02461 SLC9A7P1-201ENST00000554295 3311 ntBASIC19.42■□□□□ 0.7
COL3A1P02461 AC015802.1-201ENST00000588104 1449 ntBASIC19.42■□□□□ 0.7
COL3A1P02461 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL3A1P02461 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC19.42■□□□□ 0.7
COL3A1P02461 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
COL3A1P02461 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL3A1P02461 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
COL3A1P02461 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL3A1P02461 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL3A1P02461 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
COL3A1P02461 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL3A1P02461 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL3A1P02461 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL3A1P02461 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL3A1P02461 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
COL3A1P02461 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC19.41■□□□□ 0.7
COL3A1P02461 AC007274.2-201ENST00000421675 662 ntBASIC19.41■□□□□ 0.7
COL3A1P02461 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL3A1P02461 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC19.41■□□□□ 0.7
COL3A1P02461 IMP3P2-201ENST00000489760 475 ntBASIC19.41■□□□□ 0.7
COL3A1P02461 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC19.41■□□□□ 0.7
COL3A1P02461 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC19.41■□□□□ 0.7
COL3A1P02461 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC19.41■□□□□ 0.7
COL3A1P02461 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC19.41■□□□□ 0.7
COL3A1P02461 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC19.41■□□□□ 0.7
COL3A1P02461 AL022334.2-201ENST00000610000 484 ntBASIC19.41■□□□□ 0.7
COL3A1P02461 MIR6074-201ENST00000612054 107 ntBASIC19.41■□□□□ 0.7
COL3A1P02461 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC19.41■□□□□ 0.7
COL3A1P02461 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
COL3A1P02461 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
COL3A1P02461 AHCYP4-201ENST00000419201 1315 ntBASIC19.41■□□□□ 0.7
COL3A1P02461 AC011498.7-201ENST00000624986 2027 ntBASIC19.41■□□□□ 0.7
COL3A1P02461 GSN-209ENST00000449733 2702 ntTSL 2 BASIC19.41■□□□□ 0.7
COL3A1P02461 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
COL3A1P02461 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL3A1P02461 RAN-210ENST00000541630 1475 ntTSL 2 BASIC19.41■□□□□ 0.7
COL3A1P02461 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL3A1P02461 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL3A1P02461 LINC00552-201ENST00000625151 2579 ntBASIC19.41■□□□□ 0.7
COL3A1P02461 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL3A1P02461 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
COL3A1P02461 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL3A1P02461 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL3A1P02461 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
COL3A1P02461 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
COL3A1P02461 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC19.41■□□□□ 0.7
COL3A1P02461 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL3A1P02461 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC19.41■□□□□ 0.7
COL3A1P02461 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL3A1P02461 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC19.41■□□□□ 0.7
COL3A1P02461 WARS-203ENST00000358655 2466 ntTSL 2 BASIC19.41■□□□□ 0.7
COL3A1P02461 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL3A1P02461 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC19.41■□□□□ 0.7
COL3A1P02461 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC19.41■□□□□ 0.7
COL3A1P02461 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL3A1P02461 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC19.41■□□□□ 0.7
COL3A1P02461 AC124068.2-201ENST00000569473 1109 ntBASIC19.41■□□□□ 0.7
COL3A1P02461 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC19.41■□□□□ 0.7
COL3A1P02461 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC19.41■□□□□ 0.7
COL3A1P02461 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL3A1P02461 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC19.41■□□□□ 0.7
COL3A1P02461 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL3A1P02461 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL3A1P02461 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC19.4■□□□□ 0.7
COL3A1P02461 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.4■□□□□ 0.7
COL3A1P02461 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC19.4■□□□□ 0.7
COL3A1P02461 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL3A1P02461 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL3A1P02461 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
COL3A1P02461 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL3A1P02461 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL3A1P02461 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL3A1P02461 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms