Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MSH5O43196 PHF6-203ENST00000370800 1150 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MSH5O43196 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH5O43196 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
MSH5O43196 Y_RNA.436-201ENST00000384097 102 ntBASIC21.34■■□□□ 1.01
MSH5O43196 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH5O43196 AC005005.2-201ENST00000420779 380 ntBASIC21.34■■□□□ 1.01
MSH5O43196 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
MSH5O43196 AC024028.1-201ENST00000437145 437 ntTSL 3 BASIC21.34■■□□□ 1.01
MSH5O43196 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MSH5O43196 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MSH5O43196 AC010468.1-201ENST00000461022 817 ntBASIC21.34■■□□□ 1.01
MSH5O43196 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC21.34■■□□□ 1.01
MSH5O43196 AC011495.1-201ENST00000498085 584 ntBASIC21.34■■□□□ 1.01
MSH5O43196 AC092658.1-201ENST00000505836 891 ntBASIC21.34■■□□□ 1.01
MSH5O43196 AC011405.1-203ENST00000510110 1067 ntTSL 3 BASIC21.34■■□□□ 1.01
MSH5O43196 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC21.34■■□□□ 1.01
MSH5O43196 AC104794.3-201ENST00000566840 1248 ntBASIC21.34■■□□□ 1.01
MSH5O43196 PRR29-204ENST00000577953 565 ntTSL 4 BASIC21.34■■□□□ 1.01
MSH5O43196 PRELID3BP3-201ENST00000584963 545 ntBASIC21.34■■□□□ 1.01
MSH5O43196 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
MSH5O43196 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
MSH5O43196 AC015540.1-201ENST00000615828 501 ntBASIC21.34■■□□□ 1.01
MSH5O43196 AC010872.1-201ENST00000624225 675 ntBASIC21.34■■□□□ 1.01
MSH5O43196 RAB34-223ENST00000636154 730 ntTSL 2 BASIC21.34■■□□□ 1.01
MSH5O43196 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH5O43196 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH5O43196 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC21.34■■□□□ 1.01
MSH5O43196 GYG1-210ENST00000484197 1563 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MSH5O43196 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MSH5O43196 AC022532.1-201ENST00000624563 1728 ntBASIC21.34■■□□□ 1.01
MSH5O43196 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH5O43196 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH5O43196 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MSH5O43196 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
MSH5O43196 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH5O43196 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH5O43196 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC21.33■■□□□ 1.01
MSH5O43196 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH5O43196 GSN-203ENST00000373808 2664 ntTSL 2 BASIC21.33■■□□□ 1.01
MSH5O43196 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH5O43196 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
MSH5O43196 AL138831.3-201ENST00000623656 1458 ntBASIC21.33■■□□□ 1.01
MSH5O43196 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH5O43196 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC21.33■■□□□ 1.01
MSH5O43196 AC010491.1-201ENST00000563101 2797 ntBASIC21.33■■□□□ 1.01
MSH5O43196 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC21.33■■□□□ 1.01
MSH5O43196 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC21.33■■□□□ 1.01
MSH5O43196 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH5O43196 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH5O43196 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
MSH5O43196 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH5O43196 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH5O43196 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH5O43196 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
MSH5O43196 TCEAL9-202ENST00000372661 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH5O43196 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
MSH5O43196 AC079776.1-201ENST00000401540 1152 ntBASIC21.33■■□□□ 1.01
MSH5O43196 RAD23BP2-201ENST00000416003 1207 ntBASIC21.33■■□□□ 1.01
MSH5O43196 AL031282.1-204ENST00000418950 497 ntBASIC21.33■■□□□ 1.01
MSH5O43196 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC21.33■■□□□ 1.01
MSH5O43196 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH5O43196 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
MSH5O43196 MTCO3P43-201ENST00000440974 771 ntBASIC21.33■■□□□ 1.01
MSH5O43196 PABPC1P10-201ENST00000464731 381 ntBASIC21.33■■□□□ 1.01
MSH5O43196 BTF3L4-204ENST00000484036 941 ntAPPRIS ALT1 TSL 2 BASIC21.33■■□□□ 1.01
MSH5O43196 HOPX-209ENST00000508121 904 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
MSH5O43196 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC21.33■■□□□ 1.01
MSH5O43196 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC21.33■■□□□ 1.01
MSH5O43196 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC21.33■■□□□ 1.01
MSH5O43196 AC135586.1-201ENST00000539323 574 ntBASIC21.33■■□□□ 1.01
MSH5O43196 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC21.33■■□□□ 1.01
MSH5O43196 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC21.33■■□□□ 1.01
MSH5O43196 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC21.33■■□□□ 1.01
MSH5O43196 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC21.33■■□□□ 1.01
MSH5O43196 AC009237.12-201ENST00000604755 742 ntBASIC21.33■■□□□ 1.01
MSH5O43196 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC21.33■■□□□ 1.01
MSH5O43196 AL589739.1-201ENST00000607720 493 ntBASIC21.33■■□□□ 1.01
MSH5O43196 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC21.33■■□□□ 1.01
MSH5O43196 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC21.33■■□□□ 1.01
MSH5O43196 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC21.33■■□□□ 1.01
MSH5O43196 AC004840.1-201ENST00000636359 365 ntBASIC21.33■■□□□ 1.01
MSH5O43196 LIAS-210ENST00000638451 1159 ntTSL 5 BASIC21.33■■□□□ 1.01
MSH5O43196 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
MSH5O43196 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
MSH5O43196 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH5O43196 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
MSH5O43196 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
MSH5O43196 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC21.33■■□□□ 1
MSH5O43196 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC21.33■■□□□ 1
MSH5O43196 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
MSH5O43196 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
MSH5O43196 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC21.32■■□□□ 1
MSH5O43196 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC21.32■■□□□ 1
MSH5O43196 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
MSH5O43196 AC087499.5-201ENST00000452760 1342 ntBASIC21.32■■□□□ 1
MSH5O43196 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
MSH5O43196 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms