Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC027237.1-201ENST00000560942 655 ntBASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 AL118516.1-201ENST00000564152 670 ntBASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 AC026803.1-201ENST00000569130 274 ntBASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 AL132780.4-201ENST00000624870 1135 ntBASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 AC012362.1-201ENST00000434906 739 ntBASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 DUX4L46-201ENST00000566845 751 ntBASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
SHROOM4Q9ULL8 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 CHCHD2P9-201ENST00000461726 456 ntBASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 Z98259.2-201ENST00000641583 609 ntBASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 ZEB1-AS1-208ENST00000607166 2503 ntBASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
SHROOM4Q9ULL8 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 AC003102.2-201ENST00000589195 1469 ntBASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 CCNC-217ENST00000523985 958 ntTSL 2 BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 AP000356.3-201ENST00000382243 753 ntBASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 MIR557-201ENST00000385239 98 ntBASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 FAU-202ENST00000434372 533 ntTSL 2 BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 HPN-206ENST00000597419 1212 ntTSL 5 BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC28.15■■■□□ 2.1
SHROOM4Q9ULL8 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC28.14■■■□□ 2.1
SHROOM4Q9ULL8 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
SHROOM4Q9ULL8 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC28.14■■■□□ 2.1
SHROOM4Q9ULL8 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC28.14■■■□□ 2.1
SHROOM4Q9ULL8 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms