Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 METTL26-214ENST00000614890 801 ntTSL 3 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CLIC4-201ENST00000374379 4346 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 FNTAP2-201ENST00000430308 634 ntBASIC4.7□□□□□ -1.66
SYNE1Q8NF91 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AC012441.1-201ENST00000446669 685 ntBASIC4.7□□□□□ -1.66
SYNE1Q8NF91 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 ENPP7P5-201ENST00000541031 1031 ntBASIC4.7□□□□□ -1.66
SYNE1Q8NF91 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AC093813.1-201ENST00000605066 256 ntBASIC4.7□□□□□ -1.66
SYNE1Q8NF91 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 RAB6A-201ENST00000310653 3389 ntAPPRIS P5 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 PAM-204ENST00000348126 3622 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 LRRCC1-201ENST00000360375 3813 ntAPPRIS P2 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 ASAH2B-202ENST00000374007 3715 ntAPPRIS P1 TSL 3 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 RAC2-202ENST00000401529 569 ntTSL 4 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AC015818.8-201ENST00000587907 1519 ntBASIC4.7□□□□□ -1.66
SYNE1Q8NF91 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AQP2-201ENST00000199280 4174 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 SEZ6-202ENST00000335960 4195 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CDX2-201ENST00000381020 4053 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AC097376.2-205ENST00000610159 5334 ntBASIC4.7□□□□□ -1.66
SYNE1Q8NF91 ELN-234ENST00000621115 3452 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AC019294.4-201ENST00000561777 2905 ntBASIC4.7□□□□□ -1.66
SYNE1Q8NF91 PKIG-203ENST00000372887 769 ntTSL 3 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AC097724.1-201ENST00000609581 426 ntBASIC4.7□□□□□ -1.66
SYNE1Q8NF91 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 VPS54-203ENST00000409558 4337 ntAPPRIS ALT1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC4.7□□□□□ -1.66
SYNE1Q8NF91 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms