Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC106047.2-201ENST00000511723 743 ntBASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 PMEL-214ENST00000550447 901 ntTSL 3 BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SMC1BQ8NDV3 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 UBALD1-205ENST00000590891 2641 ntBASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 RNA5SP359-201ENST00000364838 113 ntBASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 MBP-238ENST00000580402 915 ntTSL 5 BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 AC006483.2-201ENST00000609813 515 ntBASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMC1BQ8NDV3 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 AL157407.1-201ENST00000435784 904 ntBASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 CHCHD2P2-201ENST00000503744 321 ntBASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 BCL2L12P1-201ENST00000508390 733 ntBASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 PHB-210ENST00000511832 1509 ntTSL 2 BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMC1BQ8NDV3 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 AL512306.1-201ENST00000432698 848 ntBASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 RNLS-203ENST00000437752 525 ntTSL 2 BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 VENTXP4-201ENST00000449029 958 ntBASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC17.6■□□□□ 0.41
SMC1BQ8NDV3 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms