Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
ABCA4P78363 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC12.94□□□□□ -0.34
ABCA4P78363 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC12.94□□□□□ -0.34
ABCA4P78363 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
ABCA4P78363 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
ABCA4P78363 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC12.94□□□□□ -0.34
ABCA4P78363 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC12.94□□□□□ -0.34
ABCA4P78363 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
ABCA4P78363 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
ABCA4P78363 REXO1L4P-201ENST00000605109 1937 ntBASIC12.94□□□□□ -0.34
ABCA4P78363 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
ABCA4P78363 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
ABCA4P78363 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC12.94□□□□□ -0.34
ABCA4P78363 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC12.93□□□□□ -0.34
ABCA4P78363 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC12.93□□□□□ -0.34
ABCA4P78363 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC12.93□□□□□ -0.34
ABCA4P78363 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC12.93□□□□□ -0.34
ABCA4P78363 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC12.93□□□□□ -0.34
ABCA4P78363 AC024681.1-201ENST00000521917 487 ntBASIC12.93□□□□□ -0.34
ABCA4P78363 AL160314.3-201ENST00000556041 767 ntBASIC12.93□□□□□ -0.34
ABCA4P78363 AC008805.1-201ENST00000590892 364 ntBASIC12.93□□□□□ -0.34
ABCA4P78363 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
ABCA4P78363 RN7SL736P-201ENST00000613111 269 ntBASIC12.93□□□□□ -0.34
ABCA4P78363 AC002472.3-201ENST00000640124 621 ntBASIC12.93□□□□□ -0.34
ABCA4P78363 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC12.93□□□□□ -0.34
ABCA4P78363 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC12.93□□□□□ -0.34
ABCA4P78363 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC12.93□□□□□ -0.34
ABCA4P78363 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
ABCA4P78363 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC12.93□□□□□ -0.34
ABCA4P78363 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC12.93□□□□□ -0.34
ABCA4P78363 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC12.93□□□□□ -0.34
ABCA4P78363 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC12.93□□□□□ -0.34
ABCA4P78363 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 NPPA-201ENST00000376476 728 ntTSL 3 BASIC12.93□□□□□ -0.34
ABCA4P78363 RPL5P21-201ENST00000404620 815 ntBASIC12.93□□□□□ -0.34
ABCA4P78363 MIR1227-201ENST00000408484 88 ntBASIC12.93□□□□□ -0.34
ABCA4P78363 LY6E-208ENST00000520531 490 ntTSL 2 BASIC12.93□□□□□ -0.34
ABCA4P78363 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 PRKXP1-201ENST00000561423 1122 ntBASIC12.93□□□□□ -0.34
ABCA4P78363 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC12.93□□□□□ -0.34
ABCA4P78363 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC12.93□□□□□ -0.34
ABCA4P78363 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC12.93□□□□□ -0.34
ABCA4P78363 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC12.93□□□□□ -0.34
ABCA4P78363 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC12.93□□□□□ -0.34
ABCA4P78363 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
ABCA4P78363 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC12.93□□□□□ -0.34
ABCA4P78363 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC12.93□□□□□ -0.34
ABCA4P78363 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC12.93□□□□□ -0.34
ABCA4P78363 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
ABCA4P78363 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC12.93□□□□□ -0.34
ABCA4P78363 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA4P78363 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA4P78363 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC12.92□□□□□ -0.34
ABCA4P78363 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA4P78363 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA4P78363 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC12.92□□□□□ -0.34
ABCA4P78363 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC12.92□□□□□ -0.34
ABCA4P78363 AC026316.1-201ENST00000398900 414 ntBASIC12.92□□□□□ -0.34
ABCA4P78363 ACTG1P2-201ENST00000415776 1125 ntBASIC12.92□□□□□ -0.34
ABCA4P78363 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC12.92□□□□□ -0.34
ABCA4P78363 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC12.92□□□□□ -0.34
ABCA4P78363 ACTG1P11-201ENST00000425411 1125 ntBASIC12.92□□□□□ -0.34
ABCA4P78363 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC12.92□□□□□ -0.34
ABCA4P78363 IGLV3-15-201ENST00000518356 244 ntBASIC12.92□□□□□ -0.34
ABCA4P78363 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC12.92□□□□□ -0.34
ABCA4P78363 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC12.92□□□□□ -0.34
ABCA4P78363 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC12.92□□□□□ -0.34
ABCA4P78363 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC12.92□□□□□ -0.34
ABCA4P78363 AC138894.2-201ENST00000602838 371 ntBASIC12.92□□□□□ -0.34
ABCA4P78363 AP000346.4-201ENST00000614827 381 ntBASIC12.92□□□□□ -0.34
ABCA4P78363 YRDCP1-201ENST00000621419 643 ntBASIC12.92□□□□□ -0.34
ABCA4P78363 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC12.92□□□□□ -0.34
ABCA4P78363 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC12.92□□□□□ -0.34
ABCA4P78363 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA4P78363 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA4P78363 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
ABCA4P78363 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA4P78363 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
ABCA4P78363 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms