Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
BRCA1P38398 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
BRCA1P38398 AL080243.1-201ENST00000423293 1060 ntBASIC17.63■□□□□ 0.41
BRCA1P38398 RN7SL128P-201ENST00000467883 305 ntBASIC17.63■□□□□ 0.41
BRCA1P38398 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC17.63■□□□□ 0.41
BRCA1P38398 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC17.63■□□□□ 0.41
BRCA1P38398 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC17.63■□□□□ 0.41
BRCA1P38398 AP005264.5-201ENST00000590066 467 ntBASIC17.63■□□□□ 0.41
BRCA1P38398 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC17.63■□□□□ 0.41
BRCA1P38398 COQ4-204ENST00000608951 781 ntTSL 2 BASIC17.63■□□□□ 0.41
BRCA1P38398 AC005274.1-201ENST00000623460 802 ntBASIC17.63■□□□□ 0.41
BRCA1P38398 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
BRCA1P38398 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
BRCA1P38398 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
BRCA1P38398 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
BRCA1P38398 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC17.62■□□□□ 0.41
BRCA1P38398 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
BRCA1P38398 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BRCA1P38398 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
BRCA1P38398 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
BRCA1P38398 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC17.62■□□□□ 0.41
BRCA1P38398 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
BRCA1P38398 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BRCA1P38398 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
BRCA1P38398 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
BRCA1P38398 RPL14-203ENST00000416518 812 ntTSL 3 BASIC17.62■□□□□ 0.41
BRCA1P38398 AC104961.1-201ENST00000427605 771 ntBASIC17.62■□□□□ 0.41
BRCA1P38398 SEPHS2P1-201ENST00000511618 1162 ntBASIC17.62■□□□□ 0.41
BRCA1P38398 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC17.62■□□□□ 0.41
BRCA1P38398 AC140658.4-201ENST00000561990 352 ntBASIC17.62■□□□□ 0.41
BRCA1P38398 MED11-202ENST00000573708 802 ntTSL 2 BASIC17.62■□□□□ 0.41
BRCA1P38398 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC17.62■□□□□ 0.41
BRCA1P38398 PRMT1P1-201ENST00000604252 1009 ntBASIC17.62■□□□□ 0.41
BRCA1P38398 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC17.62■□□□□ 0.41
BRCA1P38398 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC17.62■□□□□ 0.41
BRCA1P38398 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC17.62■□□□□ 0.41
BRCA1P38398 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BRCA1P38398 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BRCA1P38398 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BRCA1P38398 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BRCA1P38398 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC17.62■□□□□ 0.41
BRCA1P38398 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
BRCA1P38398 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.61■□□□□ 0.41
BRCA1P38398 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.61■□□□□ 0.41
BRCA1P38398 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC17.61■□□□□ 0.41
BRCA1P38398 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC17.61■□□□□ 0.41
BRCA1P38398 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC17.61■□□□□ 0.41
BRCA1P38398 CDCA4P4-201ENST00000435216 680 ntBASIC17.61■□□□□ 0.41
BRCA1P38398 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC17.61■□□□□ 0.41
BRCA1P38398 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC17.61■□□□□ 0.41
BRCA1P38398 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC17.61■□□□□ 0.41
BRCA1P38398 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC17.61■□□□□ 0.41
BRCA1P38398 AC006504.5-208ENST00000588784 2401 ntBASIC17.61■□□□□ 0.41
BRCA1P38398 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17.61■□□□□ 0.41
BRCA1P38398 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.61■□□□□ 0.41
BRCA1P38398 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC17.61■□□□□ 0.41
BRCA1P38398 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC17.61■□□□□ 0.41
BRCA1P38398 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
BRCA1P38398 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
BRCA1P38398 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
BRCA1P38398 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC17.61■□□□□ 0.41
BRCA1P38398 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 NHP2P1-201ENST00000335274 462 ntBASIC17.61■□□□□ 0.41
BRCA1P38398 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC17.61■□□□□ 0.41
BRCA1P38398 EEF1DP2-201ENST00000433698 843 ntBASIC17.61■□□□□ 0.41
BRCA1P38398 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC17.61■□□□□ 0.41
BRCA1P38398 AC027612.2-202ENST00000445955 1199 ntBASIC17.61■□□□□ 0.41
BRCA1P38398 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC17.61■□□□□ 0.41
BRCA1P38398 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC17.61■□□□□ 0.41
BRCA1P38398 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
BRCA1P38398 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC17.61■□□□□ 0.41
BRCA1P38398 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC17.61■□□□□ 0.41
BRCA1P38398 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC17.61■□□□□ 0.41
BRCA1P38398 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
BRCA1P38398 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms