Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1FO60840 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CACNA1FO60840 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1FO60840 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CACNA1FO60840 AL596276.2-201ENST00000447525 331 ntBASIC18.53■□□□□ 0.56
CACNA1FO60840 SPTLC1P5-201ENST00000450718 252 ntBASIC18.53■□□□□ 0.56
CACNA1FO60840 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC18.53■□□□□ 0.56
CACNA1FO60840 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1FO60840 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC18.53■□□□□ 0.56
CACNA1FO60840 IRF3-215ENST00000596822 823 ntTSL 3 BASIC18.53■□□□□ 0.56
CACNA1FO60840 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC18.53■□□□□ 0.56
CACNA1FO60840 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC18.53■□□□□ 0.56
CACNA1FO60840 AC008132.1-202ENST00000342005 1389 ntBASIC18.53■□□□□ 0.56
CACNA1FO60840 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC18.53■□□□□ 0.56
CACNA1FO60840 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CACNA1FO60840 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1FO60840 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1FO60840 AC140479.7-201ENST00000636301 2332 ntBASIC18.53■□□□□ 0.56
CACNA1FO60840 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC18.53■□□□□ 0.56
CACNA1FO60840 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC18.53■□□□□ 0.56
CACNA1FO60840 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CACNA1FO60840 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1FO60840 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC18.52■□□□□ 0.56
CACNA1FO60840 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1FO60840 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1FO60840 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1FO60840 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC18.52■□□□□ 0.56
CACNA1FO60840 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1FO60840 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1FO60840 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1FO60840 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1FO60840 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1FO60840 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1FO60840 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1FO60840 NPPA-201ENST00000376476 728 ntTSL 3 BASIC18.52■□□□□ 0.56
CACNA1FO60840 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1FO60840 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1FO60840 AC022494.1-201ENST00000466044 728 ntBASIC18.52■□□□□ 0.56
CACNA1FO60840 AC003686.1-201ENST00000550956 1034 ntBASIC18.52■□□□□ 0.56
CACNA1FO60840 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC18.52■□□□□ 0.56
CACNA1FO60840 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC18.52■□□□□ 0.56
CACNA1FO60840 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC18.52■□□□□ 0.56
CACNA1FO60840 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC18.52■□□□□ 0.56
CACNA1FO60840 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC18.52■□□□□ 0.56
CACNA1FO60840 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1FO60840 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC18.52■□□□□ 0.56
CACNA1FO60840 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC18.52■□□□□ 0.56
CACNA1FO60840 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1FO60840 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1FO60840 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CACNA1FO60840 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
CACNA1FO60840 LINC01165-201ENST00000445190 1623 ntBASIC18.52■□□□□ 0.56
CACNA1FO60840 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CACNA1FO60840 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CACNA1FO60840 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
CACNA1FO60840 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC18.52■□□□□ 0.55
CACNA1FO60840 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CACNA1FO60840 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC18.52■□□□□ 0.55
CACNA1FO60840 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC18.51■□□□□ 0.55
CACNA1FO60840 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CACNA1FO60840 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CACNA1FO60840 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CACNA1FO60840 CRCP-204ENST00000398684 492 ntTSL 2 BASIC18.51■□□□□ 0.55
CACNA1FO60840 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC18.51■□□□□ 0.55
CACNA1FO60840 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC18.51■□□□□ 0.55
CACNA1FO60840 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC18.51■□□□□ 0.55
CACNA1FO60840 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC18.51■□□□□ 0.55
CACNA1FO60840 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC18.51■□□□□ 0.55
CACNA1FO60840 CHMP4BP1-201ENST00000556017 588 ntBASIC18.51■□□□□ 0.55
CACNA1FO60840 AC103810.3-201ENST00000583567 96 ntBASIC18.51■□□□□ 0.55
CACNA1FO60840 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC18.51■□□□□ 0.55
CACNA1FO60840 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC18.51■□□□□ 0.55
CACNA1FO60840 AC104506.1-201ENST00000609247 429 ntBASIC18.51■□□□□ 0.55
CACNA1FO60840 AP001505.2-201ENST00000616815 443 ntBASIC18.51■□□□□ 0.55
CACNA1FO60840 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CACNA1FO60840 MYB-242ENST00000618728 3545 ntTSL 5 BASIC18.51■□□□□ 0.55
CACNA1FO60840 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CACNA1FO60840 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC18.51■□□□□ 0.55
CACNA1FO60840 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CACNA1FO60840 AC097359.2-201ENST00000604992 2389 ntBASIC18.51■□□□□ 0.55
CACNA1FO60840 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CACNA1FO60840 AC015802.1-201ENST00000588104 1449 ntBASIC18.51■□□□□ 0.55
CACNA1FO60840 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CACNA1FO60840 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
CACNA1FO60840 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CACNA1FO60840 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CACNA1FO60840 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CACNA1FO60840 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CACNA1FO60840 AL008707.1-201ENST00000422498 534 ntBASIC18.51■□□□□ 0.55
CACNA1FO60840 AC005740.2-201ENST00000511085 419 ntBASIC18.51■□□□□ 0.55
CACNA1FO60840 AP001258.2-201ENST00000529891 490 ntBASIC18.51■□□□□ 0.55
CACNA1FO60840 MEG3_2.1-201ENST00000611456 105 ntBASIC18.51■□□□□ 0.55
CACNA1FO60840 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC18.51■□□□□ 0.55
CACNA1FO60840 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CACNA1FO60840 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC18.51■□□□□ 0.55
CACNA1FO60840 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CACNA1FO60840 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CACNA1FO60840 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CACNA1FO60840 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CACNA1FO60840 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms