Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH5O43196 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH5O43196 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
MSH5O43196 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH5O43196 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
MSH5O43196 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
MSH5O43196 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH5O43196 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC21.36■■□□□ 1.01
MSH5O43196 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
MSH5O43196 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MSH5O43196 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
MSH5O43196 DPM1-203ENST00000371588 1075 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH5O43196 TMA16P2-201ENST00000413187 601 ntBASIC21.36■■□□□ 1.01
MSH5O43196 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC21.36■■□□□ 1.01
MSH5O43196 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC21.36■■□□□ 1.01
MSH5O43196 MTND2P5-201ENST00000432656 1006 ntBASIC21.36■■□□□ 1.01
MSH5O43196 TRIM60P9Y-201ENST00000438459 816 ntBASIC21.36■■□□□ 1.01
MSH5O43196 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MSH5O43196 TRIM60P11Y-201ENST00000445313 801 ntBASIC21.36■■□□□ 1.01
MSH5O43196 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC21.36■■□□□ 1.01
MSH5O43196 AC108734.3-201ENST00000481241 1165 ntBASIC21.36■■□□□ 1.01
MSH5O43196 AC137549.1-201ENST00000514243 533 ntBASIC21.36■■□□□ 1.01
MSH5O43196 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC21.36■■□□□ 1.01
MSH5O43196 KRT17P8-201ENST00000540749 863 ntBASIC21.36■■□□□ 1.01
MSH5O43196 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
MSH5O43196 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC21.36■■□□□ 1.01
MSH5O43196 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC21.36■■□□□ 1.01
MSH5O43196 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC21.36■■□□□ 1.01
MSH5O43196 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC21.36■■□□□ 1.01
MSH5O43196 AC006338.2-201ENST00000616864 791 ntBASIC21.36■■□□□ 1.01
MSH5O43196 AL353684.1-201ENST00000622677 1120 ntBASIC21.36■■□□□ 1.01
MSH5O43196 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC21.36■■□□□ 1.01
MSH5O43196 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC21.36■■□□□ 1.01
MSH5O43196 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH5O43196 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MSH5O43196 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
MSH5O43196 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC21.36■■□□□ 1.01
MSH5O43196 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH5O43196 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
MSH5O43196 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH5O43196 AC119674.1-213ENST00000641177 1386 ntBASIC21.36■■□□□ 1.01
MSH5O43196 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH5O43196 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH5O43196 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC21.35■■□□□ 1.01
MSH5O43196 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
MSH5O43196 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
MSH5O43196 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC21.35■■□□□ 1.01
MSH5O43196 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
MSH5O43196 FGL1-201ENST00000381840 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH5O43196 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
MSH5O43196 AC074138.1-201ENST00000611182 1303 ntBASIC21.35■■□□□ 1.01
MSH5O43196 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
MSH5O43196 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH5O43196 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH5O43196 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH5O43196 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
MSH5O43196 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
MSH5O43196 AC012358.1-201ENST00000366153 916 ntTSL 3 BASIC21.35■■□□□ 1.01
MSH5O43196 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC21.35■■□□□ 1.01
MSH5O43196 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH5O43196 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC21.35■■□□□ 1.01
MSH5O43196 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC21.35■■□□□ 1.01
MSH5O43196 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH5O43196 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC21.35■■□□□ 1.01
MSH5O43196 PDLIM5-208ENST00000504489 538 ntTSL 4 BASIC21.35■■□□□ 1.01
MSH5O43196 Y_RNA.688-201ENST00000516565 95 ntBASIC21.35■■□□□ 1.01
MSH5O43196 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC21.35■■□□□ 1.01
MSH5O43196 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC21.35■■□□□ 1.01
MSH5O43196 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC21.35■■□□□ 1.01
MSH5O43196 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC21.35■■□□□ 1.01
MSH5O43196 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC21.35■■□□□ 1.01
MSH5O43196 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC21.35■■□□□ 1.01
MSH5O43196 ZNF714-203ENST00000596053 800 ntTSL 2 BASIC21.35■■□□□ 1.01
MSH5O43196 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC21.35■■□□□ 1.01
MSH5O43196 BNIP3P31-201ENST00000604515 566 ntBASIC21.35■■□□□ 1.01
MSH5O43196 AC034198.2-201ENST00000606447 510 ntBASIC21.35■■□□□ 1.01
MSH5O43196 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC21.35■■□□□ 1.01
MSH5O43196 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
MSH5O43196 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC21.35■■□□□ 1.01
MSH5O43196 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
MSH5O43196 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
MSH5O43196 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC21.35■■□□□ 1.01
MSH5O43196 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH5O43196 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC21.35■■□□□ 1.01
MSH5O43196 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
MSH5O43196 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH5O43196 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC21.35■■□□□ 1.01
MSH5O43196 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
MSH5O43196 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH5O43196 AC006058.4-201ENST00000624016 1670 ntBASIC21.34■■□□□ 1.01
MSH5O43196 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
MSH5O43196 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH5O43196 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH5O43196 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
MSH5O43196 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC21.34■■□□□ 1.01
MSH5O43196 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
MSH5O43196 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC21.34■■□□□ 1.01
MSH5O43196 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
MSH5O43196 METTL5-202ENST00000308099 629 ntTSL 3 BASIC21.34■■□□□ 1.01
MSH5O43196 TMEM126B-201ENST00000358867 989 ntAPPRIS P3 TSL 2 BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms