Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC14.53□□□□□ -0.08
SLC28A1O00337 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
SLC28A1O00337 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.53□□□□□ -0.08
SLC28A1O00337 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.53□□□□□ -0.08
SLC28A1O00337 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
SLC28A1O00337 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.53□□□□□ -0.08
SLC28A1O00337 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SLC28A1O00337 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SLC28A1O00337 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC14.52□□□□□ -0.08
SLC28A1O00337 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
SLC28A1O00337 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
SLC28A1O00337 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.08
SLC28A1O00337 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
SLC28A1O00337 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SLC28A1O00337 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC14.52□□□□□ -0.08
SLC28A1O00337 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SLC28A1O00337 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SLC28A1O00337 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
SLC28A1O00337 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SLC28A1O00337 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.52□□□□□ -0.09
SLC28A1O00337 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.52□□□□□ -0.09
SLC28A1O00337 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SLC28A1O00337 AL139094.1-201ENST00000405549 1188 ntBASIC14.52□□□□□ -0.09
SLC28A1O00337 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SLC28A1O00337 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.52□□□□□ -0.09
SLC28A1O00337 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.52□□□□□ -0.09
SLC28A1O00337 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SLC28A1O00337 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.52□□□□□ -0.09
SLC28A1O00337 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.52□□□□□ -0.09
SLC28A1O00337 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.52□□□□□ -0.09
SLC28A1O00337 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.52□□□□□ -0.09
SLC28A1O00337 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SLC28A1O00337 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.52□□□□□ -0.09
SLC28A1O00337 BRI3BPP1-201ENST00000594224 787 ntBASIC14.52□□□□□ -0.09
SLC28A1O00337 AL390955.2-201ENST00000603032 514 ntBASIC14.52□□□□□ -0.09
SLC28A1O00337 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.09
SLC28A1O00337 AC007431.3-201ENST00000623221 587 ntBASIC14.52□□□□□ -0.09
SLC28A1O00337 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SLC28A1O00337 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.52□□□□□ -0.09
SLC28A1O00337 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.09
SLC28A1O00337 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC14.52□□□□□ -0.09
SLC28A1O00337 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SLC28A1O00337 C8orf49-201ENST00000525043 1968 ntBASIC14.52□□□□□ -0.09
SLC28A1O00337 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SLC28A1O00337 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SLC28A1O00337 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
SLC28A1O00337 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
SLC28A1O00337 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SLC28A1O00337 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
SLC28A1O00337 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.52□□□□□ -0.09
SLC28A1O00337 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SLC28A1O00337 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SLC28A1O00337 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
SLC28A1O00337 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SLC28A1O00337 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SLC28A1O00337 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.52□□□□□ -0.09
SLC28A1O00337 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.51□□□□□ -0.09
SLC28A1O00337 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.51□□□□□ -0.09
SLC28A1O00337 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SLC28A1O00337 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.51□□□□□ -0.09
SLC28A1O00337 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
SLC28A1O00337 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SLC28A1O00337 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.51□□□□□ -0.09
SLC28A1O00337 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.51□□□□□ -0.09
SLC28A1O00337 AC152010.1-201ENST00000415779 2006 ntBASIC14.51□□□□□ -0.09
SLC28A1O00337 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SLC28A1O00337 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SLC28A1O00337 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SLC28A1O00337 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SLC28A1O00337 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SLC28A1O00337 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.51□□□□□ -0.09
SLC28A1O00337 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SLC28A1O00337 SPDYE19P-201ENST00000338590 713 ntBASIC14.51□□□□□ -0.09
SLC28A1O00337 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SLC28A1O00337 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SLC28A1O00337 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SLC28A1O00337 AC134915.1-201ENST00000426461 574 ntBASIC14.51□□□□□ -0.09
SLC28A1O00337 BASP1P1-201ENST00000430708 665 ntBASIC14.51□□□□□ -0.09
SLC28A1O00337 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.51□□□□□ -0.09
SLC28A1O00337 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.51□□□□□ -0.09
SLC28A1O00337 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
SLC28A1O00337 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SLC28A1O00337 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.51□□□□□ -0.09
SLC28A1O00337 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.51□□□□□ -0.09
SLC28A1O00337 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SLC28A1O00337 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.51□□□□□ -0.09
SLC28A1O00337 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.51□□□□□ -0.09
SLC28A1O00337 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.51□□□□□ -0.09
SLC28A1O00337 DUX4L47-201ENST00000566374 394 ntBASIC14.51□□□□□ -0.09
SLC28A1O00337 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.51□□□□□ -0.09
SLC28A1O00337 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.51□□□□□ -0.09
SLC28A1O00337 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
SLC28A1O00337 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.51□□□□□ -0.09
SLC28A1O00337 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
SLC28A1O00337 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SLC28A1O00337 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms