Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 PHF5A-201ENST00000216252 1086 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 RN7SKP230-201ENST00000365642 335 ntBASIC11.38□□□□□ -0.59
COL6A5A8TX70 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 AC073869.2-201ENST00000417338 1026 ntBASIC11.38□□□□□ -0.59
COL6A5A8TX70 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 KRT8P1-201ENST00000557533 1207 ntBASIC11.38□□□□□ -0.59
COL6A5A8TX70 ACTBP9-201ENST00000587663 1099 ntBASIC11.38□□□□□ -0.59
COL6A5A8TX70 AC022098.2-201ENST00000590528 518 ntTSL 4 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 AC007250.1-201ENST00000608934 338 ntBASIC11.38□□□□□ -0.59
COL6A5A8TX70 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 PCDH8P1-201ENST00000428983 2773 ntBASIC11.37□□□□□ -0.59
COL6A5A8TX70 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 MIR645-201ENST00000385283 94 ntBASIC11.37□□□□□ -0.59
COL6A5A8TX70 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 TLE1P1-201ENST00000422965 589 ntBASIC11.37□□□□□ -0.59
COL6A5A8TX70 SNRPCP15-201ENST00000424055 192 ntBASIC11.37□□□□□ -0.59
COL6A5A8TX70 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 EHF-205ENST00000527935 557 ntTSL 2 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 MBP-230ENST00000528160 584 ntTSL 5 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 CRYAB-213ENST00000533475 1119 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 MRPS31P4-202ENST00000613769 583 ntTSL 4 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 API5-202ENST00000420461 2009 ntTSL 2 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 AC006372.4-201ENST00000624122 1543 ntBASIC11.37□□□□□ -0.59
COL6A5A8TX70 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 AC008021.1-201ENST00000474180 414 ntBASIC11.37□□□□□ -0.59
COL6A5A8TX70 RNA5SP406-201ENST00000516106 112 ntBASIC11.37□□□□□ -0.59
COL6A5A8TX70 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 AC140912.1-202ENST00000561802 194 ntTSL 3 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 TPST2P1-201ENST00000564073 1102 ntBASIC11.37□□□□□ -0.59
COL6A5A8TX70 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 C17orf62-234ENST00000584503 584 ntTSL 2 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC11.37□□□□□ -0.59
COL6A5A8TX70 AC005746.3-201ENST00000614751 393 ntBASIC11.37□□□□□ -0.59
COL6A5A8TX70 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
COL6A5A8TX70 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 AP002353.1-201ENST00000528257 1599 ntBASIC11.36□□□□□ -0.59
COL6A5A8TX70 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
COL6A5A8TX70 GOLGA6L16P-201ENST00000441780 1299 ntBASIC11.36□□□□□ -0.59
COL6A5A8TX70 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC11.36□□□□□ -0.59
COL6A5A8TX70 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC11.36□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 124.1 ms