Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC12.82□□□□□ -0.36
COL12A1Q99715 PGAM1P11-201ENST00000416729 680 ntBASIC12.82□□□□□ -0.36
COL12A1Q99715 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
COL12A1Q99715 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC12.82□□□□□ -0.36
COL12A1Q99715 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC12.82□□□□□ -0.36
COL12A1Q99715 F11R-204ENST00000537746 1245 ntTSL 2 BASIC12.82□□□□□ -0.36
COL12A1Q99715 MIR6720-201ENST00000611664 98 ntBASIC12.82□□□□□ -0.36
COL12A1Q99715 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC12.82□□□□□ -0.36
COL12A1Q99715 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC12.82□□□□□ -0.36
COL12A1Q99715 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
COL12A1Q99715 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC12.82□□□□□ -0.36
COL12A1Q99715 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC12.82□□□□□ -0.36
COL12A1Q99715 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC12.82□□□□□ -0.36
COL12A1Q99715 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
COL12A1Q99715 AC104961.1-201ENST00000427605 771 ntBASIC12.82□□□□□ -0.36
COL12A1Q99715 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC12.82□□□□□ -0.36
COL12A1Q99715 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC12.82□□□□□ -0.36
COL12A1Q99715 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
COL12A1Q99715 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC12.82□□□□□ -0.36
COL12A1Q99715 ALG1L3P-201ENST00000503331 765 ntBASIC12.82□□□□□ -0.36
COL12A1Q99715 HNRNPA1P16-201ENST00000575692 955 ntBASIC12.82□□□□□ -0.36
COL12A1Q99715 RN7SL121P-201ENST00000584223 273 ntBASIC12.82□□□□□ -0.36
COL12A1Q99715 AC133540.1-201ENST00000620845 1019 ntBASIC12.82□□□□□ -0.36
COL12A1Q99715 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC12.82□□□□□ -0.36
COL12A1Q99715 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC12.82□□□□□ -0.36
COL12A1Q99715 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
COL12A1Q99715 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
COL12A1Q99715 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC12.82□□□□□ -0.36
COL12A1Q99715 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC12.82□□□□□ -0.36
COL12A1Q99715 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL12A1Q99715 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
COL12A1Q99715 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
COL12A1Q99715 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
COL12A1Q99715 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC12.81□□□□□ -0.36
COL12A1Q99715 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
COL12A1Q99715 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC12.81□□□□□ -0.36
COL12A1Q99715 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 GGTLC4P-201ENST00000402176 664 ntBASIC12.81□□□□□ -0.36
COL12A1Q99715 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC12.81□□□□□ -0.36
COL12A1Q99715 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC12.81□□□□□ -0.36
COL12A1Q99715 DLG4-206ENST00000485100 1004 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
COL12A1Q99715 IDH3A-213ENST00000559205 566 ntTSL 4 BASIC12.81□□□□□ -0.36
COL12A1Q99715 MIR3188-201ENST00000583494 85 ntBASIC12.81□□□□□ -0.36
COL12A1Q99715 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC12.81□□□□□ -0.36
COL12A1Q99715 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
COL12A1Q99715 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
COL12A1Q99715 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
COL12A1Q99715 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
COL12A1Q99715 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
COL12A1Q99715 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
COL12A1Q99715 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 AC098934.1-203ENST00000442868 1262 ntBASIC12.81□□□□□ -0.36
COL12A1Q99715 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC12.81□□□□□ -0.36
COL12A1Q99715 LY6E-215ENST00000523847 427 ntTSL 3 BASIC12.81□□□□□ -0.36
COL12A1Q99715 LINC02352-201ENST00000557928 468 ntTSL 5 BASIC12.81□□□□□ -0.36
COL12A1Q99715 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC12.81□□□□□ -0.36
COL12A1Q99715 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
COL12A1Q99715 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC12.81□□□□□ -0.36
COL12A1Q99715 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC12.81□□□□□ -0.36
COL12A1Q99715 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms