Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 TPO-203ENST00000346956 2923 ntTSL 5 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 REXO1L5P-201ENST00000622260 2098 ntBASIC13.4□□□□□ -0.26
SKA3Q8IX90 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 AL645937.2-201ENST00000396808 931 ntBASIC13.4□□□□□ -0.26
SKA3Q8IX90 NUS1P3-201ENST00000423502 862 ntBASIC13.4□□□□□ -0.26
SKA3Q8IX90 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 RN7SL692P-201ENST00000464677 288 ntBASIC13.4□□□□□ -0.26
SKA3Q8IX90 AP005018.1-201ENST00000525475 301 ntBASIC13.4□□□□□ -0.26
SKA3Q8IX90 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 CLUHP6-201ENST00000580789 941 ntBASIC13.4□□□□□ -0.26
SKA3Q8IX90 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 ABBA01031660.1-201ENST00000635219 756 ntBASIC13.4□□□□□ -0.26
SKA3Q8IX90 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
SKA3Q8IX90 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SKA3Q8IX90 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.27
SKA3Q8IX90 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
SKA3Q8IX90 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 AC005840.4-201ENST00000541242 2494 ntBASIC13.39□□□□□ -0.27
SKA3Q8IX90 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 PES1-204ENST00000402284 2144 ntTSL 5 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 AC079781.5-202ENST00000641784 3743 ntBASIC13.39□□□□□ -0.27
SKA3Q8IX90 AC098614.1-201ENST00000368528 745 ntBASIC13.39□□□□□ -0.27
SKA3Q8IX90 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 RN7SL752P-201ENST00000463779 287 ntBASIC13.39□□□□□ -0.27
SKA3Q8IX90 TAF8-206ENST00000472818 719 ntTSL 2 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 AL596325.1-201ENST00000563991 1082 ntBASIC13.39□□□□□ -0.27
SKA3Q8IX90 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 METTL26-214ENST00000614890 801 ntTSL 3 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SKA3Q8IX90 PRSS30P-206ENST00000641773 873 ntBASIC13.39□□□□□ -0.27
SKA3Q8IX90 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
SKA3Q8IX90 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 173.7 ms