Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 ATP6V0CP2-201ENST00000469409 207 ntBASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 AC091804.1-201ENST00000486888 567 ntBASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 AC126915.1-201ENST00000522847 1038 ntBASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 AC131206.1-201ENST00000538078 1211 ntBASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 AL451050.2-201ENST00000606967 682 ntBASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 AC013726.1-201ENST00000563747 2285 ntBASIC16.65■□□□□ 0.26
CCDC60Q8IWA6 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CCDC60Q8IWA6 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.64■□□□□ 0.26
CCDC60Q8IWA6 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CCDC60Q8IWA6 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 TCAF2P1-201ENST00000291129 2421 ntBASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 GCOM2-201ENST00000509133 1104 ntBASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 NKG7-204ENST00000595217 816 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 AC022748.3-201ENST00000621828 275 ntBASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 AL162426.1-201ENST00000624141 743 ntBASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC16.64■□□□□ 0.25
CCDC60Q8IWA6 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 AL596257.1-201ENST00000641463 2694 ntBASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 AC007292.2-201ENST00000593524 1812 ntBASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 LINC01101-201ENST00000622953 1884 ntBASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 NKAIN1P1-201ENST00000435754 582 ntBASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 SERPINA13P-202ENST00000478994 924 ntBASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 AC044849.1-201ENST00000519737 1188 ntBASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 AL139099.5-201ENST00000635274 300 ntBASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC60Q8IWA6 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC60Q8IWA6 AC006058.4-201ENST00000624016 1670 ntBASIC16.62■□□□□ 0.25
CCDC60Q8IWA6 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC60Q8IWA6 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC60Q8IWA6 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CCDC60Q8IWA6 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC60Q8IWA6 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC60Q8IWA6 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms