Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
USP39Q53GS9 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
USP39Q53GS9 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
USP39Q53GS9 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
USP39Q53GS9 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
USP39Q53GS9 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
USP39Q53GS9 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
USP39Q53GS9 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.32■□□□□ 0.04
USP39Q53GS9 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
USP39Q53GS9 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.32■□□□□ 0.04
USP39Q53GS9 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
USP39Q53GS9 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC15.32■□□□□ 0.04
USP39Q53GS9 DEF8-202ENST00000418391 852 ntTSL 2 BASIC15.32■□□□□ 0.04
USP39Q53GS9 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.32■□□□□ 0.04
USP39Q53GS9 HINT2P1-201ENST00000419438 481 ntBASIC15.32■□□□□ 0.04
USP39Q53GS9 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.32■□□□□ 0.04
USP39Q53GS9 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC15.32■□□□□ 0.04
USP39Q53GS9 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC15.32■□□□□ 0.04
USP39Q53GS9 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC15.32■□□□□ 0.04
USP39Q53GS9 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.32■□□□□ 0.04
USP39Q53GS9 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC15.32■□□□□ 0.04
USP39Q53GS9 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.32■□□□□ 0.04
USP39Q53GS9 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 KRT8P19-201ENST00000551916 1455 ntBASIC15.32■□□□□ 0.04
USP39Q53GS9 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
USP39Q53GS9 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
USP39Q53GS9 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC15.32■□□□□ 0.04
USP39Q53GS9 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.32■□□□□ 0.04
USP39Q53GS9 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
USP39Q53GS9 AP002414.2-201ENST00000591780 3365 ntBASIC15.32■□□□□ 0.04
USP39Q53GS9 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.31■□□□□ 0.04
USP39Q53GS9 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.31■□□□□ 0.04
USP39Q53GS9 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
USP39Q53GS9 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.31■□□□□ 0.04
USP39Q53GS9 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.31■□□□□ 0.04
USP39Q53GS9 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
USP39Q53GS9 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.31■□□□□ 0.04
USP39Q53GS9 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 GGCT-203ENST00000409144 836 ntTSL 2 BASIC15.31■□□□□ 0.04
USP39Q53GS9 CYP46A4P-201ENST00000414953 267 ntBASIC15.31■□□□□ 0.04
USP39Q53GS9 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC15.31■□□□□ 0.04
USP39Q53GS9 AC016700.1-201ENST00000429424 312 ntBASIC15.31■□□□□ 0.04
USP39Q53GS9 Z97180.1-201ENST00000445173 988 ntBASIC15.31■□□□□ 0.04
USP39Q53GS9 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC15.31■□□□□ 0.04
USP39Q53GS9 NCK2-206ENST00000522586 490 ntTSL 5 BASIC15.31■□□□□ 0.04
USP39Q53GS9 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.31■□□□□ 0.04
USP39Q53GS9 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 RNF41-210ENST00000552244 716 ntTSL 3 BASIC15.31■□□□□ 0.04
USP39Q53GS9 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.31■□□□□ 0.04
USP39Q53GS9 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC15.31■□□□□ 0.04
USP39Q53GS9 RN7SL713P-201ENST00000582127 302 ntBASIC15.31■□□□□ 0.04
USP39Q53GS9 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
USP39Q53GS9 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 ZACNP1-201ENST00000612259 710 ntBASIC15.31■□□□□ 0.04
USP39Q53GS9 AC091812.3-201ENST00000621362 345 ntBASIC15.31■□□□□ 0.04
USP39Q53GS9 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
USP39Q53GS9 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
USP39Q53GS9 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms