Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
COL28A1Q2UY09 AP005117.1-202ENST00000581724 1908 ntBASIC14.54□□□□□ -0.08
COL28A1Q2UY09 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 AC138035.3-201ENST00000622706 2791 ntBASIC14.54□□□□□ -0.08
COL28A1Q2UY09 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.54□□□□□ -0.08
COL28A1Q2UY09 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 CNN2P10-201ENST00000443067 918 ntBASIC14.54□□□□□ -0.08
COL28A1Q2UY09 FGFR3P1-201ENST00000449999 601 ntBASIC14.54□□□□□ -0.08
COL28A1Q2UY09 PHKG1P2-201ENST00000457537 863 ntBASIC14.54□□□□□ -0.08
COL28A1Q2UY09 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.54□□□□□ -0.08
COL28A1Q2UY09 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.53□□□□□ -0.08
COL28A1Q2UY09 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 AL023775.1-201ENST00000454907 1746 ntBASIC14.53□□□□□ -0.08
COL28A1Q2UY09 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 PARVG-202ENST00000415224 999 ntTSL 2 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 ACTG1P2-201ENST00000415776 1125 ntBASIC14.53□□□□□ -0.08
COL28A1Q2UY09 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 ACTG1P11-201ENST00000425411 1125 ntBASIC14.53□□□□□ -0.08
COL28A1Q2UY09 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 RN7SL181P-201ENST00000462921 277 ntBASIC14.53□□□□□ -0.08
COL28A1Q2UY09 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC14.53□□□□□ -0.08
COL28A1Q2UY09 AP001065.2-201ENST00000617205 644 ntBASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms