Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC13.13□□□□□ -0.31
UBA52P62987 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
UBA52P62987 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC13.13□□□□□ -0.31
UBA52P62987 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.13□□□□□ -0.31
UBA52P62987 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
UBA52P62987 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC13.13□□□□□ -0.31
UBA52P62987 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 AC027612.1-201ENST00000445234 2395 ntBASIC13.13□□□□□ -0.31
UBA52P62987 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC13.13□□□□□ -0.31
UBA52P62987 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC13.13□□□□□ -0.31
UBA52P62987 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
UBA52P62987 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC13.13□□□□□ -0.31
UBA52P62987 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
UBA52P62987 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
UBA52P62987 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
UBA52P62987 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 U91328.1-201ENST00000437528 223 ntBASIC13.13□□□□□ -0.31
UBA52P62987 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC13.13□□□□□ -0.31
UBA52P62987 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC13.13□□□□□ -0.31
UBA52P62987 AC004840.1-201ENST00000636359 365 ntBASIC13.13□□□□□ -0.31
UBA52P62987 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
UBA52P62987 TNN-203ENST00000622870 3719 ntTSL 5 BASIC13.13□□□□□ -0.31
UBA52P62987 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.13□□□□□ -0.31
UBA52P62987 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
UBA52P62987 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
UBA52P62987 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 INTS4P1-203ENST00000641008 3683 ntBASIC13.12□□□□□ -0.31
UBA52P62987 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC13.12□□□□□ -0.31
UBA52P62987 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC13.12□□□□□ -0.31
UBA52P62987 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC13.12□□□□□ -0.31
UBA52P62987 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC13.12□□□□□ -0.31
UBA52P62987 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
UBA52P62987 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
UBA52P62987 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC13.12□□□□□ -0.31
UBA52P62987 RPS19-201ENST00000221975 500 ntTSL 3 BASIC13.12□□□□□ -0.31
UBA52P62987 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 NME2-201ENST00000393183 568 ntTSL 2 BASIC13.12□□□□□ -0.31
UBA52P62987 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
UBA52P62987 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC13.12□□□□□ -0.31
UBA52P62987 DFFBP1-201ENST00000433250 979 ntBASIC13.12□□□□□ -0.31
UBA52P62987 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC13.12□□□□□ -0.31
UBA52P62987 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC13.12□□□□□ -0.31
UBA52P62987 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC13.12□□□□□ -0.31
UBA52P62987 AL079307.3-201ENST00000556114 283 ntBASIC13.12□□□□□ -0.31
UBA52P62987 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC13.12□□□□□ -0.31
UBA52P62987 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
UBA52P62987 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC13.12□□□□□ -0.31
UBA52P62987 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC13.12□□□□□ -0.31
UBA52P62987 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.12□□□□□ -0.31
UBA52P62987 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC13.12□□□□□ -0.31
UBA52P62987 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC13.12□□□□□ -0.31
UBA52P62987 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.12□□□□□ -0.31
UBA52P62987 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC13.12□□□□□ -0.31
UBA52P62987 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
UBA52P62987 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC13.12□□□□□ -0.31
UBA52P62987 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
UBA52P62987 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms