Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC16.36■□□□□ 0.21
HTTP42858 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
HTTP42858 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.36■□□□□ 0.21
HTTP42858 WASH3P-207ENST00000560956 1394 ntBASIC16.36■□□□□ 0.21
HTTP42858 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
HTTP42858 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC16.36■□□□□ 0.21
HTTP42858 DUX4L50-201ENST00000455245 715 ntBASIC16.36■□□□□ 0.21
HTTP42858 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC16.36■□□□□ 0.21
HTTP42858 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 PSME2-217ENST00000615264 874 ntTSL 5 BASIC16.36■□□□□ 0.21
HTTP42858 PSME2-218ENST00000630027 185 ntTSL 3 BASIC16.36■□□□□ 0.21
HTTP42858 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC16.36■□□□□ 0.21
HTTP42858 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 FUCA1P1-201ENST00000374476 1351 ntBASIC16.36■□□□□ 0.21
HTTP42858 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC16.36■□□□□ 0.21
HTTP42858 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC16.36■□□□□ 0.21
HTTP42858 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC16.36■□□□□ 0.21
HTTP42858 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC16.35■□□□□ 0.21
HTTP42858 PRMT1P1-201ENST00000604252 1009 ntBASIC16.35■□□□□ 0.21
HTTP42858 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.35■□□□□ 0.21
HTTP42858 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.35■□□□□ 0.21
HTTP42858 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC16.35■□□□□ 0.21
HTTP42858 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
HTTP42858 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC16.35■□□□□ 0.21
HTTP42858 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
HTTP42858 KRT8P1-201ENST00000557533 1207 ntBASIC16.35■□□□□ 0.21
HTTP42858 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC16.35■□□□□ 0.21
HTTP42858 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC16.35■□□□□ 0.21
HTTP42858 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.35■□□□□ 0.21
HTTP42858 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.35■□□□□ 0.21
HTTP42858 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
HTTP42858 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC16.35■□□□□ 0.21
HTTP42858 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.35■□□□□ 0.21
HTTP42858 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
HTTP42858 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HTTP42858 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
HTTP42858 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.35■□□□□ 0.21
HTTP42858 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
HTTP42858 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.34■□□□□ 0.21
HTTP42858 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.34■□□□□ 0.21
HTTP42858 FDPSP7-201ENST00000429043 1054 ntBASIC16.34■□□□□ 0.21
HTTP42858 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC16.34■□□□□ 0.21
HTTP42858 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
HTTP42858 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HTTP42858 AC084262.1-201ENST00000567818 751 ntBASIC16.34■□□□□ 0.21
HTTP42858 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC16.34■□□□□ 0.21
HTTP42858 ST5-261ENST00000626808 1071 ntTSL 5 BASIC16.34■□□□□ 0.21
HTTP42858 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HTTP42858 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC16.34■□□□□ 0.21
HTTP42858 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.34■□□□□ 0.21
HTTP42858 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HTTP42858 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HTTP42858 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HTTP42858 AL591122.2-201ENST00000624125 1853 ntBASIC16.34■□□□□ 0.21
HTTP42858 AGGF1P1-201ENST00000509500 2073 ntBASIC16.34■□□□□ 0.21
HTTP42858 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HTTP42858 NAA40-205ENST00000539656 577 ntTSL 4 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms