Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC9P31274 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC9P31274 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC19.65■□□□□ 0.74
HOXC9P31274 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC19.65■□□□□ 0.74
HOXC9P31274 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
HOXC9P31274 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
HOXC9P31274 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC19.65■□□□□ 0.74
HOXC9P31274 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HOXC9P31274 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC19.64■□□□□ 0.74
HOXC9P31274 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HOXC9P31274 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
HOXC9P31274 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HOXC9P31274 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
HOXC9P31274 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
HOXC9P31274 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
HOXC9P31274 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
HOXC9P31274 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
HOXC9P31274 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC9P31274 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
HOXC9P31274 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC9P31274 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC9P31274 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC9P31274 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC9P31274 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC9P31274 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC9P31274 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC19.64■□□□□ 0.73
HOXC9P31274 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC9P31274 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC9P31274 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC19.64■□□□□ 0.73
HOXC9P31274 OR2R1P-201ENST00000441404 914 ntBASIC19.64■□□□□ 0.73
HOXC9P31274 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC19.64■□□□□ 0.73
HOXC9P31274 AC008723.1-201ENST00000506922 207 ntBASIC19.64■□□□□ 0.73
HOXC9P31274 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC19.64■□□□□ 0.73
HOXC9P31274 AC003686.1-201ENST00000550956 1034 ntBASIC19.64■□□□□ 0.73
HOXC9P31274 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC19.64■□□□□ 0.73
HOXC9P31274 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC19.64■□□□□ 0.73
HOXC9P31274 MIR3188-201ENST00000583494 85 ntBASIC19.64■□□□□ 0.73
HOXC9P31274 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC19.64■□□□□ 0.73
HOXC9P31274 AC087045.2-201ENST00000606279 1003 ntBASIC19.64■□□□□ 0.73
HOXC9P31274 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC19.64■□□□□ 0.73
HOXC9P31274 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC19.64■□□□□ 0.73
HOXC9P31274 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC19.64■□□□□ 0.73
HOXC9P31274 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC9P31274 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC9P31274 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC19.64■□□□□ 0.73
HOXC9P31274 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC19.64■□□□□ 0.73
HOXC9P31274 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC9P31274 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
HOXC9P31274 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC9P31274 PAUPAR-201ENST00000630360 2965 ntBASIC19.64■□□□□ 0.73
HOXC9P31274 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HOXC9P31274 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC19.64■□□□□ 0.73
HOXC9P31274 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC19.64■□□□□ 0.73
HOXC9P31274 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC9P31274 HYMAI-201ENST00000635591 3347 ntBASIC19.63■□□□□ 0.73
HOXC9P31274 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
HOXC9P31274 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC9P31274 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
HOXC9P31274 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC9P31274 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC9P31274 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC19.63■□□□□ 0.73
HOXC9P31274 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC19.63■□□□□ 0.73
HOXC9P31274 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC19.63■□□□□ 0.73
HOXC9P31274 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC19.63■□□□□ 0.73
HOXC9P31274 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC9P31274 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC9P31274 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
HOXC9P31274 AC078991.1-201ENST00000437297 610 ntBASIC19.63■□□□□ 0.73
HOXC9P31274 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC19.63■□□□□ 0.73
HOXC9P31274 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC9P31274 NAT9-220ENST00000582870 896 ntTSL 5 BASIC19.63■□□□□ 0.73
HOXC9P31274 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC19.63■□□□□ 0.73
HOXC9P31274 AC103810.10-201ENST00000606504 343 ntBASIC19.63■□□□□ 0.73
HOXC9P31274 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC19.63■□□□□ 0.73
HOXC9P31274 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC9P31274 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC9P31274 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC9P31274 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC19.63■□□□□ 0.73
HOXC9P31274 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC9P31274 PPT1-215ENST00000641471 2368 ntBASIC19.63■□□□□ 0.73
HOXC9P31274 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC9P31274 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC9P31274 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC9P31274 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HOXC9P31274 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
HOXC9P31274 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
HOXC9P31274 AC138035.3-201ENST00000622706 2791 ntBASIC19.62■□□□□ 0.73
HOXC9P31274 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HOXC9P31274 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXC9P31274 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXC9P31274 AL136172.1-201ENST00000598590 1394 ntBASIC19.62■□□□□ 0.73
HOXC9P31274 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC19.62■□□□□ 0.73
HOXC9P31274 RPSAP31-201ENST00000416648 895 ntBASIC19.62■□□□□ 0.73
HOXC9P31274 NDUFS6P1-201ENST00000485187 316 ntBASIC19.62■□□□□ 0.73
HOXC9P31274 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC19.62■□□□□ 0.73
HOXC9P31274 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC19.62■□□□□ 0.73
HOXC9P31274 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC19.62■□□□□ 0.73
HOXC9P31274 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC19.62■□□□□ 0.73
HOXC9P31274 FOS-204ENST00000554617 796 ntTSL 2 BASIC19.62■□□□□ 0.73
HOXC9P31274 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms