Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
CXCL1P09341 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
CXCL1P09341 CCDC144NL-201ENST00000327925 2806 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC11.73□□□□□ -0.53
CXCL1P09341 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
CXCL1P09341 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 FAM189A2-204ENST00000455972 2107 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
CXCL1P09341 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 AP000437.1-201ENST00000624057 2085 ntBASIC11.72□□□□□ -0.53
CXCL1P09341 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC11.72□□□□□ -0.53
CXCL1P09341 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 TP73-209ENST00000603362 1668 ntTSL 5 BASIC11.72□□□□□ -0.53
CXCL1P09341 NTNG1-206ENST00000370071 3149 ntTSL 5 BASIC11.72□□□□□ -0.53
CXCL1P09341 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC11.72□□□□□ -0.53
CXCL1P09341 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 MYRIP-203ENST00000425621 2981 ntTSL 2 BASIC11.72□□□□□ -0.53
CXCL1P09341 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
CXCL1P09341 CARHSP1-218ENST00000614449 2931 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
CXCL1P09341 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC11.72□□□□□ -0.53
CXCL1P09341 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC11.72□□□□□ -0.53
CXCL1P09341 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC11.72□□□□□ -0.53
CXCL1P09341 TMEM229B-207ENST00000557006 3941 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
CXCL1P09341 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
CXCL1P09341 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC11.72□□□□□ -0.53
CXCL1P09341 PRYP6-201ENST00000514804 343 ntBASIC11.72□□□□□ -0.53
CXCL1P09341 AF238378.1-201ENST00000526806 358 ntBASIC11.72□□□□□ -0.53
CXCL1P09341 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 AC024267.1-201ENST00000582320 895 ntBASIC11.72□□□□□ -0.53
CXCL1P09341 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC11.72□□□□□ -0.53
CXCL1P09341 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC11.72□□□□□ -0.53
CXCL1P09341 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC11.72□□□□□ -0.53
CXCL1P09341 AC012617.1-204ENST00000586340 2305 ntBASIC11.72□□□□□ -0.53
CXCL1P09341 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC11.72□□□□□ -0.53
CXCL1P09341 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
CXCL1P09341 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 AL022323.5-201ENST00000624101 2059 ntBASIC11.72□□□□□ -0.53
CXCL1P09341 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
CXCL1P09341 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC11.72□□□□□ -0.53
CXCL1P09341 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC11.72□□□□□ -0.53
CXCL1P09341 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
CXCL1P09341 ALKBH5-201ENST00000399138 2748 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
CXCL1P09341 BCL2L1-201ENST00000307677 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
CXCL1P09341 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC11.72□□□□□ -0.53
CXCL1P09341 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
CXCL1P09341 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CXCL1P09341 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
CXCL1P09341 FBRSL1-205ENST00000542061 3175 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.53
CXCL1P09341 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CXCL1P09341 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
CXCL1P09341 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CXCL1P09341 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
CXCL1P09341 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CXCL1P09341 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
CXCL1P09341 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
CXCL1P09341 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC11.71□□□□□ -0.53
CXCL1P09341 SKA3-202ENST00000314759 2919 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
CXCL1P09341 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CXCL1P09341 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CXCL1P09341 AL445209.1-201ENST00000607269 3491 ntBASIC11.71□□□□□ -0.53
CXCL1P09341 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC11.71□□□□□ -0.53
CXCL1P09341 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CXCL1P09341 MPZL2-201ENST00000278937 2620 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CXCL1P09341 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CXCL1P09341 KCNMA1-285ENST00000640605 3864 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
CXCL1P09341 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
CXCL1P09341 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
CXCL1P09341 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC11.71□□□□□ -0.53
CXCL1P09341 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
CXCL1P09341 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC11.71□□□□□ -0.53
CXCL1P09341 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC11.71□□□□□ -0.53
CXCL1P09341 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC11.71□□□□□ -0.53
CXCL1P09341 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC11.71□□□□□ -0.53
CXCL1P09341 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC11.71□□□□□ -0.53
CXCL1P09341 AC022447.6-201ENST00000515522 438 ntBASIC11.71□□□□□ -0.53
CXCL1P09341 KRT18P21-201ENST00000515767 1272 ntBASIC11.71□□□□□ -0.53
CXCL1P09341 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC11.71□□□□□ -0.53
CXCL1P09341 CD63-210ENST00000550776 870 ntTSL 5 BASIC11.71□□□□□ -0.53
CXCL1P09341 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC11.71□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms