Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDKL5O76039 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDKL5O76039 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC17.53■□□□□ 0.4
CDKL5O76039 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDKL5O76039 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC17.53■□□□□ 0.4
CDKL5O76039 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDKL5O76039 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CDKL5O76039 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDKL5O76039 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
CDKL5O76039 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDKL5O76039 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDKL5O76039 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDKL5O76039 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CDKL5O76039 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CDKL5O76039 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDKL5O76039 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CDKL5O76039 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDKL5O76039 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC17.52■□□□□ 0.4
CDKL5O76039 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CDKL5O76039 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDKL5O76039 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
CDKL5O76039 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDKL5O76039 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CDKL5O76039 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDKL5O76039 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDKL5O76039 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDKL5O76039 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDKL5O76039 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDKL5O76039 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDKL5O76039 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDKL5O76039 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDKL5O76039 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDKL5O76039 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDKL5O76039 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CDKL5O76039 BAATP1-201ENST00000412284 1225 ntBASIC17.52■□□□□ 0.4
CDKL5O76039 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.52■□□□□ 0.4
CDKL5O76039 AC012441.1-201ENST00000446669 685 ntBASIC17.52■□□□□ 0.4
CDKL5O76039 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC17.52■□□□□ 0.4
CDKL5O76039 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDKL5O76039 MIR5189-201ENST00000577370 114 ntBASIC17.52■□□□□ 0.4
CDKL5O76039 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC17.52■□□□□ 0.4
CDKL5O76039 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC17.52■□□□□ 0.4
CDKL5O76039 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
CDKL5O76039 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDKL5O76039 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC17.52■□□□□ 0.39
CDKL5O76039 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CDKL5O76039 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CDKL5O76039 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CDKL5O76039 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CDKL5O76039 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CDKL5O76039 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
CDKL5O76039 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
CDKL5O76039 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CDKL5O76039 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CDKL5O76039 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDKL5O76039 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CDKL5O76039 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CDKL5O76039 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDKL5O76039 AC067750.1-201ENST00000608826 6545 ntBASIC17.51■□□□□ 0.39
CDKL5O76039 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDKL5O76039 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC17.51■□□□□ 0.39
CDKL5O76039 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC17.51■□□□□ 0.39
CDKL5O76039 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CDKL5O76039 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDKL5O76039 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC17.51■□□□□ 0.39
CDKL5O76039 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDKL5O76039 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDKL5O76039 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC17.51■□□□□ 0.39
CDKL5O76039 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDKL5O76039 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDKL5O76039 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDKL5O76039 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDKL5O76039 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDKL5O76039 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDKL5O76039 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDKL5O76039 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC17.51■□□□□ 0.39
CDKL5O76039 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC17.51■□□□□ 0.39
CDKL5O76039 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CDKL5O76039 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CDKL5O76039 AC010319.3-201ENST00000597028 470 ntBASIC17.51■□□□□ 0.39
CDKL5O76039 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
CDKL5O76039 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.51■□□□□ 0.39
CDKL5O76039 INTS4P1-203ENST00000641008 3683 ntBASIC17.51■□□□□ 0.39
CDKL5O76039 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDKL5O76039 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDKL5O76039 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDKL5O76039 C8orf49-201ENST00000525043 1968 ntBASIC17.51■□□□□ 0.39
CDKL5O76039 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CDKL5O76039 COCH-203ENST00000460581 2688 ntTSL 2 BASIC17.51■□□□□ 0.39
CDKL5O76039 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDKL5O76039 AC113367.3-201ENST00000508316 1912 ntBASIC17.51■□□□□ 0.39
CDKL5O76039 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDKL5O76039 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDKL5O76039 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDKL5O76039 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDKL5O76039 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CDKL5O76039 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC17.5■□□□□ 0.39
CDKL5O76039 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CDKL5O76039 AC134312.5-201ENST00000568031 1313 ntBASIC17.5■□□□□ 0.39
CDKL5O76039 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms