Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 PKIG-203ENST00000372887 769 ntTSL 3 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 AC211486.1-202ENST00000416371 468 ntBASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 HLA-K-203ENST00000430151 1046 ntBASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 AC211476.1-201ENST00000503899 468 ntBASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 MST1P2-201ENST00000457982 2291 ntBASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 AC011474.4-201ENST00000623523 2076 ntBASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRIM49D1C9J1S8 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 GAPDHP40-201ENST00000505218 1006 ntBASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 AC073592.8-201ENST00000624126 511 ntBASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 API5-203ENST00000455725 2257 ntTSL 2 BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRIM49D1C9J1S8 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 PTENP1-202ENST00000532280 3996 ntBASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms