Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 EIF3FP3-201ENST00000434851 1086 ntBASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 HLA-DPB2-205ENST00000435074 1188 ntBASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 HIST2H2BC-201ENST00000498492 580 ntBASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 RNA5SP423-201ENST00000517127 109 ntBASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 AC126915.1-201ENST00000522847 1038 ntBASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 PPY2P-201ENST00000582808 702 ntBASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 NKG7-204ENST00000595217 816 ntTSL 2 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 AC106872.11-201ENST00000605838 421 ntBASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 AC138035.3-201ENST00000622706 2791 ntBASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TM9SF3Q9HD45 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 AC092506.1-202ENST00000401022 528 ntBASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 REEP1-202ENST00000453231 940 ntTSL 2 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 PARP8-218ENST00000513738 596 ntTSL 4 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 AC022616.1-201ENST00000518688 554 ntBASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 ADM-202ENST00000524948 584 ntTSL 2 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 RNF41-210ENST00000552244 716 ntTSL 3 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 OR10B1P-201ENST00000601666 907 ntBASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 AL451050.2-201ENST00000606967 682 ntBASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 AL009178.2-201ENST00000597278 2719 ntBASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.09■□□□□ 0.01
TM9SF3Q9HD45 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TM9SF3Q9HD45 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
TM9SF3Q9HD45 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TM9SF3Q9HD45 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.08■□□□□ 0.01
TM9SF3Q9HD45 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms