Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 GCOM2-201ENST00000509133 1104 ntBASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 AC131206.1-201ENST00000538078 1211 ntBASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 AL160314.3-201ENST00000556041 767 ntBASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 AC090164.2-201ENST00000611487 516 ntBASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 AP001505.2-201ENST00000616815 443 ntBASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PAAF1Q9BRP4 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 AC136759.1-202ENST00000530858 2194 ntBASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 LINC00528-201ENST00000600723 2160 ntBASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 AL662890.1-201ENST00000396818 632 ntBASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 VDAC1P1-201ENST00000439229 848 ntBASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 OARD1-204ENST00000464633 717 ntTSL 2 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 RN7SL11P-201ENST00000471305 293 ntBASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 AC106794.1-201ENST00000506935 792 ntBASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 BX088702.1-201ENST00000610784 235 ntBASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 Z98259.2-201ENST00000641583 609 ntBASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 AC006486.2-201ENST00000624246 2199 ntBASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
PAAF1Q9BRP4 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
PAAF1Q9BRP4 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
PAAF1Q9BRP4 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PAAF1Q9BRP4 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.92■□□□□ 0.14
PAAF1Q9BRP4 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PAAF1Q9BRP4 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PAAF1Q9BRP4 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
PAAF1Q9BRP4 ZBED1P1-201ENST00000502364 1930 ntBASIC15.92■□□□□ 0.14
PAAF1Q9BRP4 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
PAAF1Q9BRP4 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.92■□□□□ 0.14
PAAF1Q9BRP4 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms