Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
USB1Q9BQ65 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 REXO1L2P-201ENST00000425429 2069 ntBASIC13.67□□□□□ -0.22
USB1Q9BQ65 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 ACKR1-201ENST00000368121 1240 ntBASIC13.67□□□□□ -0.22
USB1Q9BQ65 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 AC098850.1-201ENST00000419919 790 ntBASIC13.67□□□□□ -0.22
USB1Q9BQ65 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 GSAP-205ENST00000430584 600 ntTSL 5 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 SEPT14P1-201ENST00000458703 648 ntBASIC13.67□□□□□ -0.22
USB1Q9BQ65 RN7SL837P-201ENST00000463010 287 ntBASIC13.67□□□□□ -0.22
USB1Q9BQ65 AC068985.1-201ENST00000463297 703 ntTSL 5 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 MTND2P31-201ENST00000512602 616 ntBASIC13.67□□□□□ -0.22
USB1Q9BQ65 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 WASH4P-201ENST00000564273 1246 ntBASIC13.67□□□□□ -0.22
USB1Q9BQ65 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC13.67□□□□□ -0.22
USB1Q9BQ65 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 CU634019.7-201ENST00000624153 1185 ntBASIC13.67□□□□□ -0.22
USB1Q9BQ65 FP236241.2-201ENST00000624906 1185 ntBASIC13.67□□□□□ -0.22
USB1Q9BQ65 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 PGR-210ENST00000619228 3038 ntTSL 5 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 CDC14C-201ENST00000428251 1719 ntBASIC13.67□□□□□ -0.22
USB1Q9BQ65 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
USB1Q9BQ65 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
USB1Q9BQ65 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC13.66□□□□□ -0.22
USB1Q9BQ65 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
USB1Q9BQ65 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
USB1Q9BQ65 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC13.66□□□□□ -0.22
USB1Q9BQ65 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
USB1Q9BQ65 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
USB1Q9BQ65 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
USB1Q9BQ65 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.66□□□□□ -0.22
USB1Q9BQ65 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
USB1Q9BQ65 AL356585.2-201ENST00000625078 2396 ntBASIC13.66□□□□□ -0.22
USB1Q9BQ65 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
USB1Q9BQ65 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
USB1Q9BQ65 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
USB1Q9BQ65 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC13.66□□□□□ -0.22
USB1Q9BQ65 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
USB1Q9BQ65 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC13.66□□□□□ -0.22
USB1Q9BQ65 AC013268.4-201ENST00000637413 2228 ntBASIC13.66□□□□□ -0.22
USB1Q9BQ65 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC13.66□□□□□ -0.22
USB1Q9BQ65 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
USB1Q9BQ65 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
USB1Q9BQ65 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
USB1Q9BQ65 C1QBPP1-201ENST00000400117 770 ntBASIC13.66□□□□□ -0.22
USB1Q9BQ65 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
USB1Q9BQ65 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
USB1Q9BQ65 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
USB1Q9BQ65 VN1R53P-201ENST00000429536 957 ntBASIC13.66□□□□□ -0.22
USB1Q9BQ65 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC13.66□□□□□ -0.22
USB1Q9BQ65 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
USB1Q9BQ65 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC13.66□□□□□ -0.22
USB1Q9BQ65 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
USB1Q9BQ65 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC13.66□□□□□ -0.22
USB1Q9BQ65 APRT-204ENST00000563655 709 ntTSL 5 BASIC13.66□□□□□ -0.22
USB1Q9BQ65 AC068987.2-201ENST00000565518 896 ntBASIC13.66□□□□□ -0.22
USB1Q9BQ65 AC120045.2-201ENST00000567334 178 ntBASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms