Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 ZEB1-AS1-208ENST00000607166 2503 ntBASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 FGD5P1-202ENST00000614866 2498 ntBASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CHMP4CQ96CF2 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 BAATP1-201ENST00000412284 1225 ntBASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 BNIP3P42-201ENST00000454982 569 ntBASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 SAMD11P1-201ENST00000571429 661 ntBASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 BNIP3P29-201ENST00000598302 571 ntBASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 MIR6805-201ENST00000615055 62 ntBASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 AC011447.5-201ENST00000616168 564 ntBASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 GSN-215ENST00000545652 2428 ntTSL 2 BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC18.04■□□□□ 0.48
CHMP4CQ96CF2 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 AC093525.8-201ENST00000624099 1342 ntBASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 TP73-213ENST00000604479 1623 ntTSL 5 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 MPV17-208ENST00000405076 603 ntTSL 5 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 ENPP7P5-201ENST00000541031 1031 ntBASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 CICP14-201ENST00000629111 2732 ntBASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHMP4CQ96CF2 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC18.02■□□□□ 0.48
CHMP4CQ96CF2 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms