Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 AC063952.3-201ENST00000467756 308 ntBASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 AC026470.1-201ENST00000478038 846 ntBASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 SRP14-204ENST00000558720 780 ntTSL 2 BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 MARK2P16-201ENST00000605714 1723 ntBASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 MIR6746-201ENST00000620971 63 ntBASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 CTBP2P8-201ENST00000422584 1330 ntBASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SMC1BQ8NDV3 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 HLA-K-203ENST00000430151 1046 ntBASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 RBM4-207ENST00000506523 654 ntTSL 3 BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 HERC2P11-201ENST00000562845 725 ntBASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 AC100756.2-201ENST00000569537 736 ntBASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SMC1BQ8NDV3 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 MIR1301-201ENST00000408518 82 ntBASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 ACTG1P19-201ENST00000418987 1116 ntBASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 NAV1-210ENST00000593583 726 ntBASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 AC002044.2-201ENST00000624910 970 ntBASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 AC144522.1-201ENST00000625111 1658 ntBASIC17.66■□□□□ 0.42
SMC1BQ8NDV3 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms