Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SKA3Q8IX90 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SKA3Q8IX90 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SKA3Q8IX90 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SKA3Q8IX90 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SKA3Q8IX90 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 CU634019.7-201ENST00000624153 1185 ntBASIC13.42□□□□□ -0.26
SKA3Q8IX90 FP236241.2-201ENST00000624906 1185 ntBASIC13.42□□□□□ -0.26
SKA3Q8IX90 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SKA3Q8IX90 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SKA3Q8IX90 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SKA3Q8IX90 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SKA3Q8IX90 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
SKA3Q8IX90 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SKA3Q8IX90 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SKA3Q8IX90 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SKA3Q8IX90 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SKA3Q8IX90 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SKA3Q8IX90 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SKA3Q8IX90 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SKA3Q8IX90 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
SKA3Q8IX90 AGER-206ENST00000375070 1463 ntTSL 5 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SKA3Q8IX90 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
SKA3Q8IX90 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 AL360270.3-201ENST00000609118 1348 ntBASIC13.41□□□□□ -0.26
SKA3Q8IX90 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 AP006294.1-201ENST00000415407 339 ntBASIC13.41□□□□□ -0.26
SKA3Q8IX90 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 AL162726.2-201ENST00000438986 1017 ntBASIC13.41□□□□□ -0.26
SKA3Q8IX90 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 AC005252.2-201ENST00000624630 1141 ntBASIC13.41□□□□□ -0.26
SKA3Q8IX90 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 PCDHGB8P-201ENST00000502926 1973 ntBASIC13.41□□□□□ -0.26
SKA3Q8IX90 AL157414.3-201ENST00000624276 1954 ntBASIC13.41□□□□□ -0.26
SKA3Q8IX90 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
SKA3Q8IX90 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SKA3Q8IX90 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms